| Package Name | Access | Summary | Updated |
|---|---|---|---|
| vcf2maf_shahcompbio | public | vcf2maf conversion | 2025-03-25 |
| wgs_qc_html | public | No Summary | 2025-03-25 |
| single_cell_pipeline_hmmcopy_emilia | public | Bioinformatics pipeline for single cell analysis | 2025-03-25 |
| oncokb-annotator | public | No Summary | 2025-03-25 |
| pypdf2 | public | pdf toolkit for python | 2025-03-25 |
| single_cell_pseudo_bulk_qc | public | No Summary | 2025-03-25 |
| pseudo_bulk_qc_html_report | public | No Summary | 2025-03-25 |
| cell_cycle_classifier | public | Cell cycle classifier for DLP+ data. | 2025-03-25 |
| single_cell_pipeline_annotation | public | Bioinformatics pipeline for single cell analysis | 2025-03-25 |
| single_cell_pipeline_hmmcopy | public | Bioinformatics pipeline for single cell analysis | 2025-03-25 |
| destruct_utils | public | Utility scripts for destruct. | 2025-03-25 |
| circos_utils | public | Utility scripts for circos plotting. | 2025-03-25 |
| titan_wgs_utils | public | Utility scripts for titan. | 2025-03-25 |
| titan_wgs | public | Corrects GC and mappability biases for readcounts (i.e. coverage) in non-overlapping windows of fixed length for single whole genome samples, yielding a rough estimate of copy number for furthur analysis. Designed for rapid correction of high coverage whole genome tumour and normal samples. | 2025-03-25 |
| single_cell_pipeline_align | public | Bioinformatics pipeline for single cell analysis | 2025-03-25 |
| lumpy-sv | public | A general probabilistic framework for structural variant discovery | 2025-03-25 |
| bioconductor-titan | public | Corrects GC and mappability biases for readcounts (i.e. coverage) in non-overlapping windows of fixed length for single whole genome samples, yielding a rough estimate of copy number for furthur analysis. Designed for rapid correction of high coverage whole genome tumour and normal samples. | 2025-03-25 |
| corrupt-tree | public | tree for single cell dna | 2025-03-25 |
| bioconductor-hmmcopy-single-cell | public | Corrects GC and mappability biases for readcounts (i.e. coverage) in non-overlapping windows of fixed length for single whole genome samples, yielding a rough estimate of copy number for furthur analysis. Designed for rapid correction of high coverage whole genome tumour and normal samples. | 2025-03-25 |
| museqportrait | public | No Summary | 2025-03-25 |
| biowrappers | public | No Summary | 2025-03-25 |
| museq | public | Software for somatic SNV detection using next generation sequencing (NGS) data. | 2025-03-25 |
| pypeliner | public | Library for creating informatic workflows | 2025-03-25 |
