seqera
by seqera (Organization)
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| bbmap | 39.01 | BBMap is a short read aligner, as well as various other bioinformatic tools. | Mar 25, 2025 | UC-LBL license (see package) |
| bedtools | 2.30.0 | A powerful toolset for genome arithmetic | Mar 25, 2025 | MIT |
| bioconductor-annotationfilter | 1.18.0 | Facilities for Filtering Bioconductor Annotation Resources | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-annotationhub | 3.2.0 | Client to access AnnotationHub resources | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-biobase | 2.54.0 | Biobase: Base functions for Bioconductor | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-biocfilecache | 2.2.0 | Manage Files Across Sessions | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-biocgenerics | 0.40.0 | S4 generic functions used in Bioconductor | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-biocio | 1.4.0 | Standard Input and Output for Bioconductor Packages | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-biocparallel | 1.28.3 | Bioconductor facilities for parallel evaluation | Mar 25, 2025 | GPL-2 | GPL-3 |
| bioconductor-biocversion | 3.14.0 | Set the appropriate version of Bioconductor packages | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-biomart | 2.50.0 | Interface to BioMart databases (i.e. Ensembl) | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-biostrings | 2.62.0 | Efficient manipulation of biological strings | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-complexheatmap | 2.10.0 | Make Complex Heatmaps | Mar 25, 2025 | MIT + file LICENSE |
| bioconductor-delayedarray | 0.20.0 | A unified framework for working transparently with on-disk and in-memory array-like datasets | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-deseq2 | 1.34.0 | Differential gene expression analysis based on the negative binomial distribution | Mar 25, 2025 | LGPL (>= 3) |
| bioconductor-dupradar | 1.30.0 | Assessment of duplication rates in RNA-Seq datasets | Mar 25, 2025 | GPL-3 |
| bioconductor-ebseq | 1.38.0 | An R package for gene and isoform differential expression analysis of RNA-seq data | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-ensembldb | 2.18.1 | Utilities to create and use Ensembl-based annotation databases | Mar 25, 2025 | LGPL |
| bioconductor-genefilter | 1.76.0 | genefilter: methods for filtering genes from high-throughput experiments | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-genomeinfodb | 1.30.1 | Utilities for manipulating chromosome names, including modifying them to follow a particular naming style | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-genomeinfodbdata | 1.2.7 | Species and taxonomy ID look up tables used by GenomeInfoDb | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-genomicalignments | 1.30.0 | Representation and manipulation of short genomic alignments | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-genomicfeatures | 1.46.5 | Conveniently import and query gene models | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-genomicranges | 1.46.1 | Representation and manipulation of genomic intervals | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-iranges | 2.28.0 | Foundation of integer range manipulation in Bioconductor | Mar 25, 2025 | Artistic-2.0 |