seqera
by seqera (Organization)
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| sortmerna | 4.3.7 | SortMeRNA is a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads. | Mar 25, 2025 | LGPL-3.0-only |
| libzlib | 1.2.13 | Massively spiffy yet delicately unobtrusive compression library | Mar 25, 2025 | Zlib |
| zlib | 1.2.13 | Massively spiffy yet delicately unobtrusive compression library | Mar 25, 2025 | Zlib |
| bioconductor-biocgenerics | 0.40.0 | S4 generic functions used in Bioconductor | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-genomeinfodbdata | 1.2.7 | Species and taxonomy ID look up tables used by GenomeInfoDb | Mar 25, 2025 | Artistic-2.0 |
| samtools | 1.17 | Tools for dealing with SAM, BAM and CRAM files | Mar 25, 2025 | MIT |
| bioconductor-genomeinfodb | 1.30.1 | Utilities for manipulating chromosome names, including modifying them to follow a particular naming style | Mar 25, 2025 | Artistic-2.0 |
| htslib | 1.17 | C library for high-throughput sequencing data formats. | Mar 25, 2025 | MIT |
| bioconductor-summarizedexperiment | 1.24.0 | SummarizedExperiment container | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-matrixgenerics | 1.6.0 | S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects | Mar 25, 2025 | Artistic-2.0 |
| salmon | 1.10.2 | Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment | Mar 25, 2025 | GPLv3 |
| bioconductor-biobase | 2.54.0 | Biobase: Base functions for Bioconductor | Mar 25, 2025 | Artistic-2.0 |
| perl | 5.32.1 | The Perl programming language interpreter. | Mar 25, 2025 | GPL-1.0-or-later OR Artistic-1.0-Perl |
| bioconductor-biocio | 1.4.0 | Standard Input and Output for Bioconductor Packages | Mar 25, 2025 | Artistic-2.0 |
| star | 2.7.10a | An RNA-seq read aligner. | Mar 25, 2025 | GPLv3 |
| bioconductor-genomicfeatures | 1.46.5 | Conveniently import and query gene models | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-ebseq | 1.38.0 | An R package for gene and isoform differential expression analysis of RNA-seq data | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-zlibbioc | 1.40.0 | An R packaged zlib-1.2.5 | Mar 25, 2025 | Artistic-2.0 + file LICENSE |
| bioconductor-genomicranges | 1.46.1 | Representation and manipulation of genomic intervals | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-s4vectors | 0.32.4 | Foundation of vector-like and list-like containers in Bioconductor | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-noiseq | 2.38.0 | Exploratory analysis and differential expression for RNA-seq data | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-xvector | 0.34.0 | Foundation of external vector representation and manipulation in Bioconductor | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-iranges | 2.28.0 | Foundation of integer range manipulation in Bioconductor | Mar 25, 2025 | Artistic-2.0 |
| bioconductor-delayedarray | 0.20.0 | A unified framework for working transparently with on-disk and in-memory array-like datasets | Mar 25, 2025 | Artistic-2.0 |
| perl-module-build | 0.4234 | Build and install Perl modules | Mar 25, 2025 | GPL-1.0-or-later OR Artistic-1.0-Perl |