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rpetit3 / packages

Package Name Access Summary Updated
bactopia public Bactopia is a flexible pipeline for complete analysis of bacterial genomes. 2024-08-25
medaka public Neural network sequence error correction. 2023-10-04
theiacov-gc public Command-line version of the TheiaCov genomic characterization workflow for SARS-CoV-2. 2023-06-18
pmga public Command-line version of PMGA (PubMLST Genome Annotator) for all Neisseria species and Haemophilus influenzae 2023-06-18
titan-gc public Command-line version of the Titan genomic characterization workflow for viral pathogens of concern. 2023-06-18
artic public ARTIC pipeline - a bioinformatics pipeline for working with virus sequencing data sequenced with nanopore 2023-06-16
titan-nf public A Nextflow wrapper around the Titan GC workflow 2023-06-16
aspera-connect public aspera connect high-performance transfer plug-in 2023-06-16

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