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r-rclone
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public |
R version of 'GenClone' (a computer program to analyse genotypic data, test for clonality and describe spatial clonal organization, Arnaud-Haond & Belkhir 2007, <http://wwz.ifremer.fr/clonix/content/download/68205/903914/file/GenClone2.0.setup.zip>), this package allows clone handling as 'GenClone' does, plus the possibility to work with several populations, MultiLocus Lineages (MLL) custom definition and use, and p-value calculation for psex statistic (probability of originating from distinct sexual events) and psex_Fis statistic (taking account of Hardy-Weinberg equilibrium departure) as 'MLGsim'/'MLGsim2' (a program for detecting clones using a simulation approach, Stenberg et al. 2003).
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2025-04-22 |
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r-rclipboard
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Leverages the functionality of 'clipboard.js', a JavaScript library for HMTL5-based copy to clipboard from web pages (see <https://clipboardjs.com> for more information), and provides a reactive copy-to-clipboard UI button component, called 'rclipButton', for 'shiny' R applications.
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2025-04-22 |
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r-rclinicalcodes
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public |
R tools for integrating with the www.clinicalcodes.org web repository
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2025-04-22 |
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r-rclean
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To create clearer, more concise code provides this toolbox helps coders to isolate the essential parts of a script that produces a chosen result, such as an object, tables and figures written to disk and even warnings and errors. This work was funded by US National Science Foundation grant SSI-1450277 for applications of End-to-End Data Provenance.
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2025-04-22 |
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r-rcites
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public |
A programmatic interface to the Species+ <https://speciesplus.net/> database via the Species+/CITES Checklist API <https://api.speciesplus.net/>.
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2025-04-22 |
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r-rcircos
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A simple and flexible way to generate Circos 2D track plot images for genomic data visualization is implemented in this package. The types of plots include: heatmap, histogram, lines, scatterplot, tiles and plot items for further decorations include connector, link (lines and ribbons), and text (gene) label. All functions require only R graphics package that comes with R base installation.
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2025-04-22 |
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r-rchoicedialogs
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public |
Collection of portable choice dialog widgets
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2025-04-22 |
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r-rcheology
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Provides a dataset of functions in all base packages of R versions 1.0.1 onwards.
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2025-04-22 |
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r-rchallenge
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public |
A simple data science challenge system using R Markdown and Dropbox <https://www.dropbox.com/>. It requires no network configuration, does not depend on external platforms like e.g. Kaggle <https://www.kaggle.com/> and can be easily installed on a personal computer.
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2025-04-22 |
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r-rcgmin
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public |
Conjugate gradient minimization of nonlinear functions with box constraints incorporating the Dai/Yuan update. This implementation should be used in place of the "CG" algorithm of the optim() function.
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2025-04-22 |
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r-rcereal
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To facilitate using 'cereal' with Rcpp. 'cereal' is a header-only C++11 serialization library. 'cereal' takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. 'cereal' was designed to be fast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone. Please see <http://uscilab.github.io/cereal> for more information.
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2025-04-22 |
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r-rcelldata
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public |
Example dataset for 'Rcell' package. Contains images and cell data object.
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2025-04-22 |
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r-rceim
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public |
An implementation of a stochastic heuristic method for performing multidimensional function optimization. The method is inspired in the Cross-Entropy Method. It does not relies on derivatives, neither imposes particularly strong requirements into the function to be optimized. Additionally, it takes profit from multi-core processing to enable optimization of time-consuming functions.
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2025-04-22 |
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r-rcdklibs
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public |
An R interface to the Chemistry Development Kit, a Java library for chemoinformatics. Given the size of the library itself, this package is not expected to change very frequently. To make use of the CDK within R, it is suggested that you use the 'rcdk' package. Note that it is possible to directly interact with the CDK using 'rJava'. However 'rcdk' exposes functionality in a more idiomatic way. The CDK library itself is released as LGPL and the sources can be obtained from <https://github.com/cdk/cdk>.
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2025-04-22 |
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r-rcc
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public |
Functions to implement the parametric and non-parametric bootstrap confidence interval methods described in Morrison and Simon (2017) <arXiv:1702.06986>.
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2025-04-22 |
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r-rcbsubset
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public |
Tools for optimal subset matching of treated units and control units in observational studies, with support for refined covariate balance constraints, (including fine and near-fine balance as special cases). A close relative is the 'rcbalance' package.
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2025-04-22 |
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r-rcbalance
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public |
Tools for large, sparse optimal matching of treated units and control units in observational studies. Provisions are made for refined covariate balance constraints, which include fine and near-fine balance as special cases. Matches are optimal in the sense that they are computed as solutions to network optimization problems rather than greedy algorithms.
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2025-04-22 |
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r-rcarto
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public |
This package makes some maps using shapefiles and dataframes. Five kinds of maps are available : proportionnal circles, proportionnal circles colored by a discretized quantitative variable, proportionnal circles colored by the modalities of a qualitative variable, choropleth and typology.
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2025-04-22 |
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r-rcarbon
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Enables the calibration and analysis of radiocarbon dates, often but not exclusively for the purposes of archaeological research. It includes functions not only for basic calibration, uncalibration, and plotting of one or more dates, but also a statistical framework for building demographic and related longitudinal inferences from aggregate radiocarbon date lists, including: Monte-Carlo simulation test (Timpson et al 2014 <doi:10.1016/j.jas.2014.08.011>), random mark permutation test (Crema et al 2016 <doi:10.1371/journal.pone.0154809>) and spatial permutation tests (Crema, Bevan, and Shennan 2017 <doi:10.1016/j.jas.2017.09.007>).
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2025-04-22 |
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r-rcapture
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Estimation of abundance and other of demographic parameters for closed populations, open populations and the robust design in capture-recapture experiments using loglinear models.
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2025-04-22 |
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r-rcane
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There are different numeric optimizations which are used in order to estimate coefficients in models such as linear regression and neural networks. This package covers parameter estimation in linear regression using different methods such as batch gradient descent, stochastic gradient descent, minibatch gradient descent and coordinate descent. Kiwiel, Krzysztof C (2001) <doi:10.1007/PL00011414> Yu Nesterov (2004) <ISBN:1-4020-7553-7> Ferguson, Thomas S (1982) <doi:10.1080/01621459.1982.10477894> Zeiler, Matthew D (2012) <arXiv:1212.5701> Wright, Stephen J (2015) <arXiv:1502.04759>.
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2025-04-22 |
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r-r.cache
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Memoization can be used to speed up repetitive and computational expensive function calls. The first time a function that implements memoization is called the results are stored in a cache memory. The next time the function is called with the same set of parameters, the results are momentarily retrieved from the cache avoiding repeating the calculations. With this package, any R object can be cached in a key-value storage where the key can be an arbitrary set of R objects. The cache memory is persistent (on the file system).
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2025-04-22 |
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r-rca
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Relational Class Analysis (RCA) is a method for detecting heterogeneity in attitudinal data (as described in Goldberg A., 2011, Am. J. Soc, 116(5)).
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2025-04-22 |
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r-rbtt
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Tu & Zhou (1999) <doi:10.1002/(SICI)1097-0258(19991030)18:20%3C2749::AID-SIM195%3E3.0.CO;2-C> showed that comparing the means of populations whose data-generating distributions are non-negative with excess zero observations is a problem of great importance in the analysis of medical cost data. In the same study, Tu & Zhou discuss that it can be difficult to control type-I error rates of general-purpose statistical tests for comparing the means of these particular data sets. This package allows users to perform a modified bootstrap-based t-test that aims to better control type-I error rates in these situations.
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2025-04-22 |
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r-rbtc
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Implementation of the RPC-JSON API for Bitcoin and utility functions for address creation and content analysis of the blockchain.
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2025-04-22 |
