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r-later
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public |
Executes arbitrary R or C functions some time after the current time, after the R execution stack has emptied.
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2023-06-16 |
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r-httpuv
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public |
Provides low-level socket and protocol support for handling HTTP and WebSocket requests directly from within R. It is primarily intended as a building block for other packages, rather than making it particularly easy to create complete web applications using httpuv alone. httpuv is built on top of the libuv and http-parser C libraries, both of which were developed by Joyent, Inc. (See LICENSE file for libuv and http-parser license information.)
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2023-06-16 |
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r-fansi
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public |
Counterparts to R string manipulation functions that account for the effects of ANSI text formatting control sequences.
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2023-06-16 |
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r-visnetwork
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public |
Provides an R interface to the 'vis.js' JavaScript charting library. It allows an interactive visualization of networks.
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2023-06-16 |
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r-stopwords
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public |
Provides multiple sources of stopwords, for use in text analysis and natural language processing.
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2023-06-16 |
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r-squarem
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public |
Algorithms for accelerating the convergence of slow, monotone sequences from smooth, contraction mapping such as the EM algorithm. It can be used to accelerate any smooth, linearly convergent acceleration scheme. A tutorial style introduction to this package is available in a vignette on the CRAN download page or, when the package is loaded in an R session, with vignette("SQUAREM").
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2023-06-16 |
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r-bdsmatrix
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public |
This is a special case of sparse matrices, used by coxme.
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2023-06-16 |
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r-udunits2
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public |
Provides simple bindings to Unidata's udunits library.
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2023-06-16 |
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r-recommended
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public |
R is a free software environment for statistical computing and graphics.
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2023-06-16 |
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r-quadprog
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public |
This package contains routines and documentation for solving quadratic programming problems.
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2023-06-16 |
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r-pspline
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public |
Smoothing splines with penalties on order m derivatives.
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2023-06-16 |
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r-prodlim
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public |
Fast and user friendly implementation of nonparametric estimators for censored event history (survival) analysis. Kaplan-Meier and Aalen-Johansen method.
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2023-06-16 |
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r-plyr
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public |
A set of tools that solves a common set of problems: you need to break a big problem down into manageable pieces, operate on each piece and then put all the pieces back together. For example, you might want to fit a model to each spatial location or time point in your study, summarise data by panels or collapse high-dimensional arrays to simpler summary statistics. The development of 'plyr' has been generously supported by 'Becton Dickinson'.
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2023-06-16 |
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r-mvtnorm
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public |
Computes multivariate normal and t probabilities, quantiles, random deviates and densities.
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2023-06-16 |
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r-libcoin
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Basic infrastructure for linear test statistics and permutation inference in the framework of Strasser and Weber (1999) <http://epub.wu.ac.at/102/>. This package must not be used by end-users. CRAN package 'coin' implements all user interfaces and is ready to be used by anyone.
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2023-06-16 |
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r-leaps
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public |
Regression subset selection, including exhaustive search.
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2023-06-16 |
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r-lazyeval
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public |
An alternative approach to non-standard evaluation using formulas. Provides a full implementation of LISP style 'quasiquotation', making it easier to generate code with other code.
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2023-06-16 |
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r-xlsx
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public |
Provide R functions to read/write/format Excel 2007 and Excel 97/2000/XP/2003 file formats.
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2023-06-16 |
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r-threejs
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public |
Create interactive 3D scatter plots, network plots, and globes using the 'three.js' visualization library (<https://threejs.org>).
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2023-06-16 |
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r-sfsmisc
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public |
Useful utilities ['goodies'] from Seminar fuer Statistik ETH Zurich, some of which were ported from S-plus in the 1990's. For graphics, have pretty (Log-scale) axes, an enhanced Tukey-Anscombe plot, combining histogram and boxplot, 2d-residual plots, a 'tachoPlot()', pretty arrows, etc. For robustness, have a robust F test and robust range(). For system support, notably on Linux, provides 'Sys.*()' functions with more access to system and CPU information. Finally, miscellaneous utilities such as simple efficient prime numbers, integer codes, Duplicated(), toLatex.numeric() and is.whole().
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2023-06-16 |
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r-rjdbc
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public |
The RJDBC package is an implementation of R's DBI interface using JDBC as a back-end. This allows R to connect to any DBMS that has a JDBC driver.
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2023-06-16 |
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r-r.methodss3
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public |
Methods that simplify the setup of S3 generic functions and S3 methods. Major effort has been made in making definition of methods as simple as possible with a minimum of maintenance for package developers. For example, generic functions are created automatically, if missing, and naming conflict are automatically solved, if possible. The method setMethodS3() is a good start for those who in the future may want to migrate to S4. This is a cross-platform package implemented in pure R that generates standard S3 methods.
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2023-06-16 |
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r-quantmod
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public |
Specify, build, trade, and analyse quantitative financial trading strategies.
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2023-06-16 |
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r-modeltools
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public |
A collection of tools to deal with statistical models. The functionality is experimental and the user interface is likely to change in the future. The documentation is rather terse, but packages `coin' and `party' have some working examples. However, if you find the implemented ideas interesting we would be very interested in a discussion of this proposal. Contributions are more than welcome!
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2023-06-16 |
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r-miniui
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public |
Provides UI widget and layout functions for writing Shiny apps that work well on small screens.
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2023-06-16 |
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r-gplots
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public |
Various R programming tools for plotting data, including: - calculating and plotting locally smoothed summary function as ('bandplot', 'wapply'), - enhanced versions of standard plots ('barplot2', 'boxplot2', 'heatmap.2', 'smartlegend'), - manipulating colors ('col2hex', 'colorpanel', 'redgreen', 'greenred', 'bluered', 'redblue', 'rich.colors'), - calculating and plotting two-dimensional data summaries ('ci2d', 'hist2d'), - enhanced regression diagnostic plots ('lmplot2', 'residplot'), - formula-enabled interface to 'stats::lowess' function ('lowess'), - displaying textual data in plots ('textplot', 'sinkplot'), - plotting a matrix where each cell contains a dot whose size reflects the relative magnitude of the elements ('balloonplot'), - plotting "Venn" diagrams ('venn'), - displaying Open-Office style plots ('ooplot'), - plotting multiple data on same region, with separate axes ('overplot'), - plotting means and confidence intervals ('plotCI', 'plotmeans'), - spacing points in an x-y plot so they don't overlap ('space').
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2023-06-16 |
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r-ctv
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public |
Infrastructure for task views to CRAN-style repositories: Querying task views and installing the associated packages (client-side tools), generating HTML pages and storing task view information in the repository (server-side tools).
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2023-06-16 |
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r-mlmrev
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public |
Data and examples from a multilevel modelling software review as well as other well-known data sets from the multilevel modelling literature.
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2023-06-16 |
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r-irdisplay
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public |
An interface to the rich display capabilities of 'Jupyter' front-ends (e.g. 'Jupyter Notebook') <https://jupyter.org>. Designed to be used from a running 'IRkernel' session <https://irkernel.github.io>.
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2023-06-16 |
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r-functional
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public |
Curry, Compose, and other higher-order functions
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2023-06-16 |
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r-forge
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public |
Helper functions with a consistent interface to coerce and verify the types and shapes of values for input checking.
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2023-06-16 |
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r-findpython
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public |
Package designed to find an acceptable python binary.
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2023-06-16 |
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r-debugme
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public |
Specify debug messages as special string constants, and control debugging of packages via environment variables.
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2023-06-16 |
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r-rcmdcheck
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public |
Run 'R CMD check' from 'R' programmatically, and capture the results of the individual checks.
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2023-06-16 |
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r-psych
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public |
A general purpose toolbox for personality, psychometric theory and experimental psychology. Functions are primarily for multivariate analysis and scale construction using factor analysis, principal component analysis, cluster analysis and reliability analysis, although others provide basic descriptive statistics. Item Response Theory is done using factor analysis of tetrachoric and polychoric correlations. Functions for analyzing data at multiple levels include within and between group statistics, including correlations and factor analysis. Functions for simulating and testing particular item and test structures are included. Several functions serve as a useful front end for structural equation modeling. Graphical displays of path diagrams, factor analysis and structural equation models are created using basic graphics. Some of the functions are written to support a book on psychometric theory as well as publications in personality research. For more information, see the <https://personality-project.org/r> web page.
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2023-06-16 |
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r-ape
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public |
Functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.
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2023-06-16 |
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r
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public |
R is a free software environment for statistical computing and graphics.
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2023-06-16 |
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r-htmlwidgets
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public |
A framework for creating HTML widgets that render in various contexts including the R console, 'R Markdown' documents, and 'Shiny' web applications.
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2023-06-16 |
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r-formatr
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public |
Provides a function tidy_source() to format R source code. Spaces and indent will be added to the code automatically, and comments will be preserved under certain conditions, so that R code will be more human-readable and tidy. There is also a Shiny app as a user interface in this package (see tidy_app()).
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2023-06-16 |
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r-cvst
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public |
The fast cross-validation via sequential testing (CVST) procedure is an improved cross-validation procedure which uses non-parametric testing coupled with sequential analysis to determine the best parameter set on linearly increasing subsets of the data. By eliminating under-performing candidates quickly and keeping promising candidates as long as possible, the method speeds up the computation while preserving the capability of a full cross-validation. Additionally to the CVST the package contains an implementation of the ordinary k-fold cross-validation with a flexible and powerful set of helper objects and methods to handle the overall model selection process. The implementations of the Cochran's Q test with permutations and the sequential testing framework of Wald are generic and can therefore also be used in other contexts.
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2023-06-16 |
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r-assertthat
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An extension to stopifnot() that makes it easy to declare the pre and post conditions that you code should satisfy, while also producing friendly error messages so that your users know what's gone wrong.
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2023-06-16 |
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r-progress
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public |
Configurable Progress bars, they may include percentage, elapsed time, and/or the estimated completion time. They work in terminals, in 'Emacs' 'ESS', 'RStudio', 'Windows' 'Rgui' and the 'macOS' 'R.app'. The package also provides a 'C++' 'API', that works with or without 'Rcpp'.
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2023-06-16 |
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r-pbkrtest
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public |
Test in mixed effects models. Attention is on mixed effects models as implemented in the 'lme4' package. This package implements a parametric bootstrap test and a Kenward Roger modification of F-tests for linear mixed effects models and a parametric bootstrap test for generalized linear mixed models.
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2023-06-16 |
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r-multcomp
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public |
Simultaneous tests and confidence intervals for general linear hypotheses in parametric models, including linear, generalized linear, linear mixed effects, and survival models. The package includes demos reproducing analyzes presented in the book "Multiple Comparisons Using R" (Bretz, Hothorn, Westfall, 2010, CRC Press).
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2023-06-16 |
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r-loo
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public |
Efficient approximate leave-one-out cross-validation (LOO) for Bayesian models fit using Markov chain Monte Carlo. The approximation uses Pareto smoothed importance sampling (PSIS), a new procedure for regularizing importance weights. As a byproduct of the calculations, we also obtain approximate standard errors for estimated predictive errors and for the comparison of predictive errors between models. The package also provides methods for using stacking and other model weighting techniques to average Bayesian predictive distributions.
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2023-06-16 |
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r-latticeextra
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public |
Building on the infrastructure provided by the lattice package, this package provides several new high-level functions and methods, as well as additional utilities such as panel and axis annotation functions.
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2023-06-16 |
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r-irkernel
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public |
The R kernel for the 'Jupyter' environment executes R code which the front-end ('Jupyter Notebook' or other front-ends) submits to the kernel via the network.
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2023-06-16 |
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r-gtable
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public |
Tools to make it easier to work with "tables" of 'grobs'. The 'gtable' package defines a 'gtable' grob class that specifies a grid along with a list of grobs and their placement in the grid. Further the package makes it easy to manipulate and combine 'gtable' objects so that complex compositions can be build up sequentially.
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2023-06-16 |
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r-dbi
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public |
A database interface definition for communication between R and relational database management systems. All classes in this package are virtual and need to be extended by the various R/DBMS implementations.
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2023-06-16 |
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r-cvtools
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public |
Tools that allow developers to write functions for cross-validation with minimal programming effort and assist users with model selection.
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2023-06-16 |
