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r-rndtexexams
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public |
Using as input a 'LaTeX' file with a multiple choice exam, this package will produce several versions with randomized contents of the same exam. Functions for grading are also available.
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2025-03-25 |
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r-rnd
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public |
Extract the implied risk neutral density from options using various methods.
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2025-03-25 |
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r-rncbieutilslibs
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public |
Provides the libraries of the EUtils operations for the RNCBI package.
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2025-03-25 |
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r-rnbp
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public |
Use the <http://api.nbp.pl/> API through R. Retrieve currency exchange rates and gold prices data published by the National Bank of Poland in form of convenient R objects.
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2025-03-25 |
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r-rnavicell
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public |
Provides a set of functions to access a data visualization web service. For more information and a tutorial on how to use it, see https://navicell.curie.fr/pages/nav_web_service.html and https://github.com/sysbio-curie/RNaviCell.
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2025-03-25 |
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r-rnavgraphimagedata
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public |
Image data used as examples in the loon R package.
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2025-03-25 |
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r-rnaturalearthdata
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public |
Vector map data from <http://www.naturalearthdata.com/>. Access functions are provided in the accompanying package 'rnaturalearth'.
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2025-03-25 |
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r-rnassqs
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public |
Interface to access data via the United States Department of Agriculture's National Agricultural Statistical Service (NASS) 'Quick Stats' web API <https://quickstats.nass.usda.gov/api>. Convenience functions facilitate building queries based on available parameters and valid parameter values.
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2025-03-25 |
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r-rnaseqwrapper
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public |
This package is designed to streamline several of the common steps for RNA-seq analysis, including differential expression and variant discovery. For the development build, or to contribute changes to this package, please see our repository at https://bitbucket.org/petersmp/rnaseqwrapper/
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2025-03-25 |
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r-rmtstat
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public |
Functions for working with the Tracy-Widom laws and other distributions related to the eigenvalues of large Wishart matrices. The tables for computing the Tracy-Widom densities and distribution functions were computed by Momar Dieng's MATLAB package "RMLab" (formerly available on his homepage at http://math.arizona.edu/~momar/research.htm ). This package is part of a collaboration between Iain Johnstone, Zongming Ma, Patrick Perry, and Morteza Shahram. It will soon be replaced by a package with more accuracy and built-in support for relevant statistical tests.
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2025-03-25 |
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r-rmtl
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public |
Efficient solvers for 10 regularized multi-task learning algorithms applicable for regression, classification, joint feature selection, task clustering, low-rank learning, sparse learning and network incorporation. Based on the accelerated gradient descent method, the algorithms feature a state-of-art computational complexity O(1/k^2). Sparse model structure is induced by the solving the proximal operator. The detail of the package is described in the paper of Han Cao and Emanuel Schwarz (2018) <doi:10.1093/bioinformatics/bty831>.
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2025-03-25 |
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r-rmthreshold
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An algorithm which can be used to determine an objective threshold for signal-noise separation in large random matrices (correlation matrices, mutual information matrices, network adjacency matrices) is provided. The package makes use of the results of Random Matrix Theory (RMT). The algorithm increments a suppositional threshold monotonically, thereby recording the eigenvalue spacing distribution of the matrix. According to RMT, that distribution undergoes a characteristic change when the threshold properly separates signal from noise. By using the algorithm, the modular structure of a matrix - or of the corresponding network - can be unraveled.
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2025-03-25 |
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r-rms.gof
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public |
This package can be used to test any simple null hypothesis using the root-mean-square goodness of fit test. Monte Carlo estimation is used to calculate the associated P-value.
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2025-03-25 |
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r-rmsfact
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public |
Display a randomly selected quote about Richard M. Stallman based on the collection in the 'GNU Octave' function 'fact()' which was aggregated by Jordi Gutiérrez Hermoso based on the (now defunct) site stallmanfacts.com (which is accessible only via <http://archive.org>).
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2025-03-25 |
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r-rmr
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public |
Analysis of oxygen consumption data generated by Loligo (R) Systems respirometry equipment. The package includes a function for loading data output by Loligo's 'AutoResp' software (get.witrox.data()), functions for calculating metabolic rates over user-specified time intervals, extracting critical points from data using broken stick regressions based on Yeager and Ultsch (<DOI:10.1086/physzool.62.4.30157935>), and easy functions for converting between different units of barometric pressure.
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2025-03-25 |
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r-rmpw
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public |
We implement causal mediation analysis using the methods proposed by Hong (2010) and Hong, Deutsch & Hill (2015) <doi:10.3102/1076998615583902>. It allows the estimation and hypothesis testing of causal mediation effects through ratio of mediator probability weights (RMPW). This strategy conveniently relaxes the assumption of no treatment-by-mediator interaction while greatly simplifying the outcome model specification without invoking strong distributional assumptions. We also implement a sensitivity analysis by extending the RMPW method to assess potential bias in the presence of omitted pretreatment or posttreatment covariates. The sensitivity analysis strategy was proposed by Hong, Qin, and Yang (2018) <doi:10.3102/1076998617749561>.
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2025-03-25 |
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r-rmosek
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public |
This is a meta-package designed to support the installation of Rmosek (>= 6.0) and bring the optimization facilities of MOSEK (>= 6.0) to the R-language. The interface supports large-scale optimization of many kinds: Mixed-integer and continuous linear, second-order cone, exponential cone and power cone optimization, as well as continuous semidefinite optimization. Rmosek and the R-language are open-source projects. MOSEK is a proprietary product, but unrestricted trial and academic licenses are available.
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2025-03-25 |
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r-rmonad
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public |
A monadic solution to pipeline analysis. All operations -- and the errors, warnings and messages they emit -- are merged into a directed graph. Infix binary operators mediate when values are stored, how exceptions are handled, and where pipelines branch and merge. The resulting structure may be queried for debugging or report generation. 'rmonad' complements, rather than competes with, non-monadic pipeline packages like 'magrittr' or 'pipeR'. This work is funded by the NSF (award number 1546858).
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2025-03-25 |
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r-rmoajars
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public |
External jars required for package RMOA. RMOA is a framework to build data stream models on top of MOA (Massive Online Analysis - <http://moa.cms.waikato.ac.nz>). The jar files are put in this R package, the modelling logic can be found in the RMOA package.
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2025-03-25 |
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r-rmixpanel
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public |
Provides an interface to many endpoints of Mixpanel's Data Export, Engage and JQL API. The R functions allow for event and profile data export as well as for segmentation, retention, funnel and addiction analysis. Results are always parsed into convenient R objects. Furthermore it is possible to load and update profiles.
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2025-03-25 |
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r-rmisc
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public |
The Rmisc library contains many functions useful for data analysis and utility operations.
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2025-03-25 |
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r-rmio
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public |
Provides header files of 'mio', a cross-platform C++11 header-only library for memory mapped file IO <https://github.com/mandreyel/mio>.
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2025-03-25 |
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r-rmeta
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public |
Functions for simple fixed and random effects meta-analysis for two-sample comparisons and cumulative meta-analyses. Draws standard summary plots, funnel plots, and computes summaries and tests for association and heterogeneity.
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2025-03-25 |
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r-rmediation
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public |
We provide functions to compute confidence intervals (CIs) for a well-defined nonlinear function of the model parameters (e.g., product of k coefficients) in single--level and multilevel structural equation models.
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2025-03-25 |
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r-rmea
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public |
A suite of tools useful to read, visualize and export bivariate motion energy time-series. Lagged synchrony between subjects can be analyzed through windowed cross-correlation. Surrogate data generation allows an estimation of pseudosynchrony that helps to estimate the effect size of the observed synchronization. Ramseyer & Tschacher (2011) <doi:10.1037/a0023419>.
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2025-03-25 |
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r-rmdshower
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public |
'R' 'Markdown' format for 'shower' presentations, see <https://github.com/shower/shower>.
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2025-03-25 |
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r-rmdplugr
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public |
Formats for R Markdown that undo modifications by 'pandoc' and 'rmarkdown' to original 'latex' templates, such as smaller margins, paragraph spacing, and compact titles. In addition, enhancements such as author blocks with affiliations and headers and footers are introduced. All of this functionality is built around plugins that modify the default 'pandoc' template without relying on custom templates.
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2025-03-25 |
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r-rmdfiltr
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public |
A collection of 'Lua' filters that extend the functionality of R Markdown templates (e.g., count words or post-process 'pandoc-citeproc'- citations).
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2025-03-25 |
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r-rmcorr
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public |
Compute the repeated measures correlation, a statistical technique for determining the overall within-individual relationship among paired measures assessed on two or more occasions, first introduced by Bland and Altman (1995). Includes functions for diagnostics, p-value, effect size with confidence interval including optional bootstrapping, as well as graphing. Also includes several example datasets.
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2025-03-25 |
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r-rmawgen
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public |
S3 and S4 functions are implemented for spatial multi-site stochastic generation of daily time series of temperature and precipitation. These tools make use of Vector AutoRegressive models (VARs). The weather generator model is then saved as an object and is calibrated by daily instrumental "Gaussianized" time series through the 'vars' package tools. Once obtained this model, it can it can be used for weather generations and be adapted to work with several climatic monthly time series.
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2025-03-25 |
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r-r.matlab
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public |
Methods readMat() and writeMat() for reading and writing MAT files. For user with MATLAB v6 or newer installed (either locally or on a remote host), the package also provides methods for controlling MATLAB (trademark) via R and sending and retrieving data between R and MATLAB.
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2025-03-25 |
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r-rmallow
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public |
An EM algorithm to fit Mallows' Models to full or partial rankings, with or without ties.
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2025-03-25 |
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r-rmake
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public |
Creates and maintains a build process for complex analytic tasks in R. Package allows to easily generate Makefile for the (GNU) 'make' tool, which drives the build process by (in parallel) executing build commands in order to update results accordingly to given dependencies on changed data or updated source files.
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2025-03-25 |
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r-rmaf
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public |
Uses refined moving average filter based on the optimal and data-driven moving average lag q or smoothing spline to estimate trend and seasonal components, as well as irregularity (residuals) for univariate time series or data.
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2025-03-25 |
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r-rm2006
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public |
Estimation the conditional covariance matrix using the RiskMetrics 2006 methodology of Zumbach (2007) <doi:10.2139/ssrn.1420185>.
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2025-03-25 |
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r-rlmdatadriven
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public |
Data driven approach for robust regression estimation in homoscedastic and heteroscedastic context. See Wang et al. (2007), <doi:10.1198/106186007X180156> regarding homoscedastic framework.
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2025-03-25 |
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r-rlinkedin
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public |
A series of functions that allow users to access the 'LinkedIn' API to get information about connections, search for people and jobs, share updates with their network, and create group discussions. For more information about using the API please visit <https://developer.linkedin.com/>.
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2025-03-25 |
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r-rleafmap
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public |
Display spatial data with interactive maps powered by the open-source JavaScript library 'Leaflet' (see <http://leafletjs.com/>). Maps can be rendered in a web browser or displayed in the HTML viewer pane of 'RStudio'. This package is designed to be easy to use and can create complex maps with vector and raster data, web served map tiles and interface elements.
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2025-03-25 |
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r-rleafangle
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public |
Leaf angle distribution is described by a number of functions (e.g. ellipsoidal, Beta and rotated ellipsoidal). The parameters of leaf angle distributions functions are estimated through different empirical relationship. This package includes estimations of parameters of different leaf angle distribution function, plots and evaluates leaf angle distribution functions, calculates extinction coefficients given leaf angle distribution. Reference: Wang(2007)<doi:10.1016/j.agrformet.2006.12.003>.
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2025-03-25 |
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r-rldcp
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public |
Linguistic Descriptions of Complex Phenomena (LDCP) is an architecture and methodology that allows us to model complex phenomena, interpreting input data, and generating automatic text reports customized to the user needs (see <doi:10.1016/j.ins.2016.11.002> and <doi:10.1007/s00500-016-2430-5>). The proposed package contains a set of methods that facilitates the development of LDCP systems. It main goal is increasing the visibility and practical use of this research line.
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2025-03-25 |
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r-rld
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public |
Analyzes data from repeated low-dose challenge experiments and provide vaccine efficacy estimates. In addition, this package can provide guidance to design repeated low-dose challenge studies.
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2025-03-25 |
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r-rlakeanalyzer
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public |
Standardized methods for calculating common important derived physical features of lakes including water density based based on temperature, thermal layers, thermocline depth, lake number, Wedderburn number, Schmidt stability and others.
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2025-03-25 |
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r-rlab
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public |
Functions and Datasets Required for ST370 class
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2025-03-25 |
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r-rkum
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public |
Robust kernel center matrix, robust kernel cross-covariance operator for kernel unsupervised methods, kernel canonical correlation analysis, influence function of identifying significant outliers or atypical objects from multimodal datasets. Alam, M. A, Fukumizu, K., Wang Y.-P. (2018) <doi:10.1016/j.neucom.2018.04.008>. Alam, M. A, Calhoun, C. D., Wang Y.-P. (2018) <doi:10.1016/j.csda.2018.03.013>.
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2025-03-25 |
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r-rkt
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public |
Contains function rkt which computes the Mann-Kendall test (MK) and the Seasonal and the Regional Kendall Tests for trend (SKT and RKT) and Theil-Sen's slope estimator.
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2025-03-25 |
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r-rkmetrics
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public |
Hybrid Mortality Modelling (HMM) provides a framework in which mortality around "the accident hump" and at very old ages can be modelled under a single model. The graphics' codes necessary for visualization of the models' output are included here. Specifically, the graphics are based on the assumption that, the mortality rates can be expressed as a function of the area under the curve between the crude mortality rates plots and the tangential transform of the force of mortality.
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2025-03-25 |
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r-rklout
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An interface of R to Klout API v2. It fetches Klout Score for a Twitter Username/handle in real time. Klout is a website and mobile app that uses social media analytics to rank its users according to online social influence via the "Klout Score", which is a numerical value between 1 and 100. In determining the user score, Klout measures the size of a user's social media network and correlates the content created to measure how other users interact with that content.
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2025-03-25 |
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r-rkelly
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Calculates the Kelly criterion (Kelly, J.L. (1956) <doi:10.1002/j.1538-7305.1956.tb03809.x>) for bets given quoted prices, model predictions and commissions. Additionally it contains helper functions to calculate the probabilities for wins and draws in multi-leg games.
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2025-03-25 |
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r-rkeeljars
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public |
'KEEL' is a popular Java software for a large number of different knowledge data discovery tasks. Furthermore, 'RKEEL' is a package with a R code layer between R and 'KEEL', for using 'KEEL' in R code. This package downloads and install the .jar files necessary for 'RKEEL' algorithms execution. For more information about 'KEEL', see <http://www.keel.es/>.
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2025-03-25 |
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r-rkeeldata
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public |
'KEEL' is a popular Java software for a large number of different knowledge data discovery tasks. Furthermore, 'RKEEL' is a package with a R code layer between R and 'KEEL', for using 'KEEL' in R code. This package includes the datasets from 'KEEL' in .dat format for its use in 'RKEEL' package. For more information about 'KEEL', see <http://www.keel.es/>.
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2025-03-25 |
