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r-ggformula
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public |
Provides a formula interface to 'ggplot2' graphics.
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2024-01-16 |
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r-ggfortify
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public |
Unified plotting tools for statistics commonly used, such as GLM, time series, PCA families, clustering and survival analysis. The package offers a single plotting interface for these analysis results and plots in a unified style using 'ggplot2'.
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2024-01-16 |
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r-ggfittext
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public |
A 'ggplot2' extension to fit text into a box by growing, shrinking or wrapping the text.
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2024-01-16 |
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r-ggeffects
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public |
Compute marginal effects and adjusted predictions from statistical models and returns the result as tidy data frames. These data frames are ready to use with the 'ggplot2'-package. Effects and predictions can be calculated for many different models. Interaction terms, splines and polynomial terms are also supported. The main functions are ggpredict(), ggemmeans() and ggeffect(). There is a generic plot()-method to plot the results using 'ggplot2'.
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2024-01-16 |
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r-ggedit
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public |
Interactively edit 'ggplot2' layer and theme aesthetics definitions.
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2024-01-16 |
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r-ggdist
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public |
Provides primitives for visualizing distributions using 'ggplot2' that are particularly tuned for visualizing uncertainty in either a frequentist or Bayesian mode. Both analytical distributions (such as frequentist confidence distributions or Bayesian priors) and distributions represented as samples (such as bootstrap distributions or Bayesian posterior samples) are easily visualized. Visualization primitives include but are not limited to: points with multiple uncertainty intervals, eye plots (Spiegelhalter D., 1999) <https://ideas.repec.org/a/bla/jorssa/v162y1999i1p45-58.html>, density plots, gradient plots, dot plots (Wilkinson L., 1999) <doi:10.1080/00031305.1999.10474474>, quantile dot plots (Kay M., Kola T., Hullman J., Munson S., 2016) <doi:10.1145/2858036.2858558>, complementary cumulative distribution function barplots (Fernandes M., Walls L., Munson S., Hullman J., Kay M., 2018) <doi:10.1145/3173574.3173718>, and fit curves with multiple uncertainty ribbons.
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2024-01-16 |
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r-ggeasy
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public |
Provides a series of aliases to commonly used but difficult to remember 'ggplot2' sequences.
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2024-01-16 |
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r-gge
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public |
Create biplots for GGE (genotype plus genotype-by-environment) and GGB (genotype plus genotype-by-block-of-environments) models. See Laffont et al. (2013) <doi:10.2135/cropsci2013.03.0178>.
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2024-01-16 |
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r-ggdensity
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public |
The 'ggplot2' package provides simple functions for visualizing contours of 2-d kernel density estimates. 'ggdensity' implements several additional density estimators as well as more interpretable visualizations based on highest density regions instead of the traditional height of the estimated density surface.
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2024-01-16 |
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r-ggdendro
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public |
This is a set of tools for dendrograms and tree plots using 'ggplot2'. The 'ggplot2' philosophy is to clearly separate data from the presentation. Unfortunately the plot method for dendrograms plots directly to a plot device without exposing the data. The 'ggdendro' package resolves this by making available functions that extract the dendrogram plot data. The package provides implementations for 'tree', 'rpart', as well as diana and agnes (from 'cluster') diagrams.
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2024-01-16 |
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r-ggdemetra
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public |
Provides 'ggplot2' functions to return the results of seasonal and trading day adjustment made by 'RJDemetra'. 'RJDemetra' is an 'R' interface around 'JDemetra+' (<https://github.com/jdemetra/jdemetra-app>), the seasonal adjustment software officially recommended to the members of the European Statistical System and the European System of Central Banks.
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2024-01-16 |
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r-ggdark
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public |
Activate dark mode on your favorite 'ggplot2' theme with dark_mode() or use the dark versions of 'ggplot2' themes, including dark_theme_gray(), dark_theme_minimal(), and others. When a dark theme is applied, all geom color and geom fill defaults are changed to make them visible against a dark background. To restore the defaults to their original values, use invert_geom_defaults().
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2024-01-16 |
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r-ggdag
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public |
Tidy, analyze, and plot directed acyclic graphs (DAGs). 'ggdag' is built on top of 'dagitty', an R package that uses the 'DAGitty' web tool (<http://dagitty.net>) for creating and analyzing DAGs. 'ggdag' makes it easy to tidy and plot 'dagitty' objects using 'ggplot2' and 'ggraph', as well as common analytic and graphical functions, such as determining adjustment sets and node relationships.
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2024-01-16 |
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r-ggbump
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public |
A geom for ggplot to create bump plots. Can be good to use for showing rank over time.
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2024-01-16 |
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r-ggcorrplot
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public |
The 'ggcorrplot' package can be used to visualize easily a correlation matrix using 'ggplot2'. It provides a solution for reordering the correlation matrix and displays the significance level on the plot. It also includes a function for computing a matrix of correlation p-values.
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2024-01-16 |
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r-ggbeeswarm
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public |
Provides two methods of plotting categorical scatter plots such that the arrangement of points within a category reflects the density of data at that region, and avoids over-plotting.
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2024-01-16 |
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r-gganimate
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public |
The grammar of graphics as implemented in the 'ggplot2' package has been successful in providing a powerful API for creating static visualisation. In order to extend the API for animated graphics this package provides a completely new set of grammar, fully compatible with 'ggplot2' for specifying transitions and animations in a flexible and extensible way.
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2024-01-16 |
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r-ggbreak
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public |
An implementation of scale functions for setting axis breaks of a 'gg' plot.
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2024-01-16 |
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r-ggalt
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public |
A compendium of new geometries, coordinate systems, statistical transformations, scales and fonts for 'ggplot2', including splines, 1d and 2d densities, univariate average shifted histograms, a new map coordinate system based on the 'PROJ.4'-library along with geom_cartogram() that mimics the original functionality of geom_map(), formatters for "bytes", a stat_stepribbon() function, increased 'plotly' compatibility and the 'StateFace' open source font 'ProPublica'. Further new functionality includes lollipop charts, dumbbell charts, the ability to encircle points and coordinate-system-based text annotations.
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2024-01-16 |
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r-gfonts
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public |
Download 'Google' fonts and generate 'CSS' to use in 'rmarkdown' documents and 'shiny' applications. Some popular fonts are included and ready to use.
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2024-01-16 |
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r-ggalluvial
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public |
Alluvial plots use variable-width ribbons and stacked bar plots to represent multi-dimensional or repeated-measures data with categorical or ordinal variables; see Riehmann, Hanfler, and Froehlich (2005) <doi:10.1109/INFVIS.2005.1532152> and Rosvall and Bergstrom (2010) <doi:10.1371/journal.pone.0008694>. Alluvial plots are statistical graphics in the sense of Wilkinson (2006) <doi:10.1007/0-387-28695-0>; they share elements with Sankey diagrams and parallel sets plots but are uniquely determined from the data and a small set of parameters. This package extends Wickham's (2010) <doi:10.1198/jcgs.2009.07098> layered grammar of graphics to generate alluvial plots from tidy data.
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2024-01-16 |
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r-ggally
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public |
The R package 'ggplot2' is a plotting system based on the grammar of graphics. 'GGally' extends 'ggplot2' by adding several functions to reduce the complexity of combining geometric objects with transformed data. Some of these functions include a pairwise plot matrix, a two group pairwise plot matrix, a parallel coordinates plot, a survival plot, and several functions to plot networks.
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2024-01-16 |
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r-germinationmetrics
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Provides functions to compute various germination indices such as germinability, median germination time, mean germination time, mean germination rate, speed of germination, Timson's index, germination value, coefficient of uniformity of germination, uncertainty of germination process, synchrony of germination etc. from germination count data. Includes functions for fitting cumulative seed germination curves using four-parameter hill function and computation of associated parameters. See the vignette for more, including full list of citations for the methods implemented.
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2024-01-16 |
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r-getoptlong
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public |
This is a command-line argument parser which wraps the powerful Perl module Getopt::Long and with some adaptations for easier use in R. It also provides a simple way for variable interpolation in R.
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2024-01-16 |
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r-gfa
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public |
Factor analysis implementation for multiple data sources, i.e., for groups of variables. The whole data analysis pipeline is provided, including functions and recommendations for data normalization and model definition, as well as missing value prediction and model visualization. The model group factor analysis (GFA) is inferred with Gibbs sampling, and it has been presented originally by Virtanen et al. (2012), and extended in Klami et al. (2015) <DOI:10.1109/TNNLS.2014.2376974> and Bunte et al. (2016) <DOI:10.1093/bioinformatics/btw207>; for details, see the citation info.
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2024-01-16 |
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r-gexp
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public |
Generates experiments - simulating structured or experimental data as: completely randomized design, randomized block design, latin square design, factorial and split-plot experiments (Ferreira, 2008, ISBN:8587692526; Naes et al., 2007 <doi:10.1002/qre.841>; Rencher et al., 2007, ISBN:9780471754985; Montgomery, 2001, ISBN:0471316490).
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2024-01-16 |
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r-gevcdn
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public |
Implements a flexible nonlinear modelling framework for nonstationary generalized extreme value analysis in hydroclimatology following Cannon (2010) <doi:10.1002/hyp.7506>.
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2024-01-16 |
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r-gets
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Automated General-to-Specific (GETS) modelling of the mean and variance of a regression, and indicator saturation methods for detecting and testing for structural breaks in the mean, see Pretis, Reade and Sucarrat (2018) <doi:10.18637/jss.v086.i03>.
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2024-01-16 |
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r-geouy
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public |
The toolbox have functions to load and process geographic information for Uruguay. And extra-function to get address coordinates and orthophotos through the uruguayan 'IDE' API <https://www.gub.uy/infraestructura-datos-espaciales/tramites-y-servicios/servicios/sistema-unico-direcciones-geograficas>.
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2024-01-16 |
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r-geospt
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public |
Estimation of the variogram through trimmed mean, radial basis functions (optimization, prediction and cross-validation), summary statistics from cross-validation, pocket plot, and design of optimal sampling networks through sequential and simultaneous points methods.
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2024-01-16 |
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r-getopt
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public |
Package designed to be used with Rscript to write '#!' shebang scripts that accept short and long flags/options. Many users will prefer using instead the packages optparse or argparse which add extra features like automatically generated help option and usage, support for default values, positional argument support, etc.
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2024-01-16 |
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r-gestalt
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public |
Provides a suite of function-building tools centered around a (forward) composition operator, %>>>%, which extends the semantics of the 'magrittr' %>% operator and supports 'Tidyverse' quasiquotation. It enables you to construct composite functions that can be inspected and transformed as list-like objects. In conjunction with %>>>%, a compact function constructor, fn(), and a partial-application constructor, partial(), are also provided; both support quasiquotation.
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2024-01-16 |
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r-geozoo
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public |
Geometric objects defined in 'geozoo' can be simulated or displayed in the R package 'tourr'.
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2024-01-16 |
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r-gepaf
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public |
Encode and decode the Google Encoded Polyline Algorithm Format (<https://developers.google.com/maps/documentation/utilities/polylinealgorithm>).
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2024-01-16 |
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r-geomtextpath
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public |
A 'ggplot2' extension that allows text to follow curved paths. Curved text makes it easier to directly label paths or neatly annotate in polar co-ordinates.
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2024-01-16 |
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r-geotools
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public |
Tools
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2024-01-16 |
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r-geoscale
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public |
Functionality for adding the geological timescale to bivariate plots.
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2024-01-16 |
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r-geosed
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public |
Find the smallest circle that contains all longitude and latitude input points. From the generated center and radius, variable side polygons can be created, navigation based on bearing and distance can be applied, and more. Based on a modified version of Welzl's algorithm for smallest circle. Distance calculations are based on the haversine formula. Calculations for distance, midpoint, bearing and more are derived from <https://www.movable-type.co.uk>.
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2024-01-16 |
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r-geosapi
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public |
Provides an R interface to the GeoServer REST API, allowing to upload and publish data in a GeoServer web-application and expose data to OGC Web-Services. The package currently supports all CRUD (Create,Read,Update,Delete) operations on GeoServer workspaces, namespaces, datastores (stores of vector data), featuretypes, layers, styles, as well as vector data upload operations. For more information about the GeoServer REST API, see <https://docs.geoserver.org/stable/en/user/rest/>.
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2024-01-16 |
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r-geomorph
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public |
Read, manipulate, and digitize landmark data, generate shape variables via Procrustes analysis for points, curves and surfaces, perform shape analyses, and provide graphical depictions of shapes and patterns of shape variation.
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2024-01-16 |
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r-geojsonio
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public |
Convert data to 'GeoJSON' or 'TopoJSON' from various R classes, including vectors, lists, data frames, shape files, and spatial classes. 'geojsonio' does not aim to replace packages like 'sp', 'rgdal', 'rgeos', but rather aims to be a high level client to simplify conversions of data from and to 'GeoJSON' and 'TopoJSON'.
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2024-01-16 |
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r-geonames
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The web service at <https://www.geonames.org/> provides a number of spatial data queries, including administrative area hierarchies, city locations and some country postal code queries. A (free) username is required and rate limits exist.
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2024-01-16 |
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r-geoknife
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public |
Processes gridded datasets found on the U.S. Geological Survey Geo Data Portal web application or elsewhere, using a web-enabled workflow that eliminates the need to download and store large datasets that are reliably hosted on the Internet. The package provides access to several data subset and summarization algorithms that are available on remote web processing servers (Read et al. (2015) <doi:10.1111/ecog.01880>).
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2024-01-16 |
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r-geometa
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public |
Provides facilities to handle reading and writing of geographic metadata defined with OGC/ISO 19115, 11119 and 19110 geographic information metadata standards, and encoded using the ISO 19139 (XML) standard. It includes also a facility to check the validity of ISO 19139 XML encoded metadata.
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2024-01-16 |
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r-geobr
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public |
Easy access to official spatial data sets of Brazil as 'sf' objects in R. The package includes a wide range of geospatial data available at various geographic scales and for various years with harmonized attributes, projection and fixed topology.
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2024-01-16 |
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r-geomapdata
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Data sets included here are for use with package GEOmap. These include world map, USA map, Coso map, Japan Map.
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2024-01-16 |
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r-geojson
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public |
Classes for 'GeoJSON' to make working with 'GeoJSON' easier. Includes S3 classes for 'GeoJSON' classes with brief summary output, and a few methods such as extracting and adding bounding boxes, properties, and coordinate reference systems; working with newline delimited 'GeoJSON'; and serializing to/from 'Geobuf' binary 'GeoJSON' format.
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2024-01-16 |
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r-geodata
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Functions for downloading of geographic data for use in spatial analysis and mapping. The package facilitates access to climate, crops, elevation, land use, soil, species occurrence, accessibility, administrative boundaries and other data.
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2024-01-16 |
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r-geofacet
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Provides geofaceting functionality for 'ggplot2'. Geofaceting arranges a sequence of plots of data for different geographical entities into a grid that preserves some of the geographical orientation.
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2024-01-16 |
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r-genwin
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Defines window or bin boundaries for the analysis of genomic data. Boundaries are based on the inflection points of a cubic smoothing spline fitted to the raw data. Along with defining boundaries, a technique to evaluate results obtained from unequally-sized windows is provided. Applications are particularly pertinent for, though not limited to, genome scans for selection based on variability between populations (e.g. using Wright's fixations index, Fst, which measures variability in subpopulations relative to the total population).
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2024-01-16 |
