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r-odds.n.ends
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public |
Computes odds ratios and 95% confidence intervals from a generalized linear model object. It also computes model significance with the chi-squared statistic and p-value and it computes model fit using a contingency table to determine the percent of observations for which the model correctly predicts the value of the outcome. Calculates model sensitivity and specificity.
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2024-01-16 |
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r-odds.converter
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public |
Conversion between the most common odds types for sports betting. Hong Kong odds, US odds, Decimal odds, Indonesian odds, Malaysian odds, and raw Probability are covered in this package.
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2024-01-16 |
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r-odbc
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public |
A DBI-compatible interface to ODBC databases.
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2024-01-16 |
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r-odb
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public |
Functions to create, connect, update and query 'HSQL' databases embedded in Open Document Databases files, as 'OpenOffice' and 'LibreOffice' do.
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2024-01-16 |
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r-ocp
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public |
Implements the Bayesian online changepoint detection method by Adams and MacKay (2007) <arXiv:0710.3742> for univariate or multivariate data. Gaussian and Poisson probability models are implemented. Provides post-processing functions with alternative ways to extract changepoints.
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2024-01-16 |
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r-ocedata
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public |
Several Oceanographic data sets are provided for use by the 'oce' package and for other purposes.
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2024-01-16 |
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r-ocomposition
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public |
Regression model where the response variable is a rank-indexed compositional vector (non-negative values that sum up to one and are ordered from the largest to the smallest). Parameters are estimated in the Bayesian framework using MCMC methods.
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2024-01-16 |
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r-occ
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public |
Generic function for estimating positron emission tomography (PET) neuroreceptor occupancies from the total volumes of distribution of a set of regions of interest. Fittings methods include the simple 'reference region' and 'ordinary least squares' (sometimes known as occupancy plot) methods, as well as the more efficient 'restricted maximum likelihood estimation'.
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2024-01-16 |
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r-oca
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public |
Computes optimal capital allocations based on some standard principles such as Haircut, Overbeck type II and the Covariance Allocation Principle. It also provides some shortcuts for obtaining the Value at Risk and the Expectation Shortfall, using both the normal and the t-student distribution, see Urbina and Guillén (2014)<doi:10.1016/j.eswa.2014.05.017> and Urbina (2013)<http://hdl.handle.net/2099.1/19443>.
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2024-01-16 |
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r-obssens
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public |
Observational studies are limited in that there could be an unmeasured variable related to both the response variable and the primary predictor. If this unmeasured variable were included in the analysis it would change the relationship (possibly changing the conclusions). Sensitivity analysis is a way to see how much of a relationship needs to exist with the unmeasured variable before the conclusions change. This package provides tools for doing a sensitivity analysis for regression (linear, logistic, and cox) style models.
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2024-01-16 |
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r-nzelect
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public |
Convenient access to New Zealand election results by voting place. Voting places have been matched to Regional Council, Territorial Authority, and Area Unit, to facilitate matching with additional data. Opinion polls since 2002 and some convenience analytical function are also supplied.
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2024-01-16 |
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r-obmbpkg
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public |
Applies an objective Bayesian method to the Mb capture-recapture model to estimate the population size N. The Mb model is a class of capture-recapture methods used to account for variations in capture probability due to animal behavior. Under the Mb formulation, the initial capture of an animal may effect the probability of subsequent captures due to their becoming "trap happy" or "trap shy."
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2024-01-16 |
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r-objectsignals
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public |
A mutable Signal object can report changes to its state, clients could register functions so that they are called whenever the signal is emitted. The signal could be emitted, disconnected, blocked, unblocked, and buffered.
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2024-01-16 |
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r-oarray
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public |
Generalise the starting point of the array index.
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2024-01-16 |
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r-oaiharvester
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public |
Harvest metadata using the Open Archives Initiative Protocol for Metadata Harvesting (OAI-PMH) version 2.0 (for more information, see <https://www.openarchives.org/OAI/openarchivesprotocol.html>).
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2024-01-16 |
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r-oacolors
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public |
Provides carefully chosen color palettes as used a.o. at OpenAnalytics <http://www.openanalytics.eu>.
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2024-01-16 |
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r-nzpullover
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public |
Datasets of driving offences and fines in New Zealand between 2009 and 2017. Originally published by the New Zealand Police at <http://www.police.govt.nz/about-us/publication/road-policing-driver-offence-data-january-2009-december-2017>.
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2024-01-16 |
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r-nzilbb.labbcat
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public |
'LaBB-CAT' is a web-based language corpus management system developed by the New Zealand Institute of Language, Brain and Behaviour (NZILBB) - see <https://labbcat.canterbury.ac.nz>. This package defines functions for accessing corpus data in a 'LaBB-CAT' instance. You must have at least version 20230224.1731 of 'LaBB-CAT' to use this package. For more information about 'LaBB-CAT', see Robert Fromont and Jennifer Hay (2008) <doi:10.3366/E1749503208000142> or Robert Fromont (2017) <doi:10.1016/j.csl.2017.01.004>.
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2024-01-16 |
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r-nycflights13
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None |
Airline on-time data for all flights departing NYC in 2013. Also includes useful 'metadata' on airlines, airports, weather, and planes.
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2024-01-16 |
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r-nsyllable
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public |
Counts syllables in character vectors for English words. Imputes syllables as the number of vowel sequences for words not found.
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2024-01-16 |
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r-nullabor
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public |
Tools for visual inference. Generate null data sets and null plots using permutation and simulation. Calculate distance metrics for a lineup, and examine the distributions of metrics.
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2024-01-16 |
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r-numkm
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public |
To add the table of numbers at risk below the Kaplan-Meier plot.
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2024-01-16 |
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r-numgen
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public |
A number series generator that creates number series items based on cognitive models.
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2024-01-16 |
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r-numform
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public |
Format numbers and plots for publication; includes the removal of leading zeros, standardization of number of digits, addition of affixes, and a p-value formatter. These tools combine the functionality of several 'base' functions such as 'paste()', 'format()', and 'sprintf()' into specific use case functions that are named in a way that is consistent with usage, making their names easy to remember and easy to deploy.
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2024-01-16 |
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r-numderiv
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None |
Methods for calculating (usually) accurate numerical first and second order derivatives. Accurate calculations are done using 'Richardson''s' extrapolation or, when applicable, a complex step derivative is available. A simple difference method is also provided. Simple difference is (usually) less accurate but is much quicker than 'Richardson''s' extrapolation and provides a useful cross-check. Methods are provided for real scalar and vector valued functions.
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2024-01-16 |
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r-numbersbr
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public |
Validate, format and compare identification numbers used in Brazil. These numbers are used to identify individuals (CPF), vehicles (RENAVAN), companies (CNPJ) and etc. Functions to format, validate and compare these numbers have been implemented in a vectorized way in order to speed up validations and comparisons in big datasets.
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2024-01-16 |
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r-numbers
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public |
Provides number-theoretic functions for factorization, prime numbers, twin primes, primitive roots, modular logarithm and inverses, extended GCD, Farey series and continued fractions. Includes Legendre and Jacobi symbols, some divisor functions, Euler's Phi function, etc.
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2024-01-16 |
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r-nscancor
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public |
Two implementations of canonical correlation analysis (CCA) that are based on iterated regression. By choosing the appropriate regression algorithm for each data domain, it is possible to enforce sparsity, non-negativity or other kinds of constraints on the projection vectors. Multiple canonical variables are computed sequentially using a generalized deflation scheme, where the additional correlation not explained by previous variables is maximized. nscancor() is used to analyze paired data from two domains, and has the same interface as cancor() from the 'stats' package (plus some extra parameters). mcancor() is appropriate for analyzing data from three or more domains. See <https://sigg-iten.ch/learningbits/2014/01/20/canonical-correlation-analysis-under-constraints/> and Sigg et al. (2007) <doi:10.1109/MLSP.2007.4414315> for more details.
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2024-01-16 |
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r-nsprcomp
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public |
Two methods for performing a constrained principal component analysis (PCA), where non-negativity and/or sparsity constraints are enforced on the principal axes (PAs). The function 'nsprcomp' computes one principal component (PC) after the other. Each PA is optimized such that the corresponding PC has maximum additional variance not explained by the previous components. In contrast, the function 'nscumcomp' jointly computes all PCs such that the cumulative variance is maximal. Both functions have the same interface as the 'prcomp' function from the 'stats' package (plus some extra parameters), and both return the result of the analysis as an object of class 'nsprcomp', which inherits from 'prcomp'. See <https://sigg-iten.ch/learningbits/2013/05/27/nsprcomp-is-on-cran/> and Sigg et al. (2008) <doi:10.1145/1390156.1390277> for more details.
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2024-01-16 |
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r-nso1212
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public |
National Statistical Office of Mongolia (NSO) is the national statistical service and an organization of Mongolian government. NSO provides open access to official data via its API <http://opendata.1212.mn/en/doc>. The package NSO1212 has functions for accessing the API service. The functions are compatible with the API v2.0 and get data sets and its detailed informations from the API.
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2024-01-16 |
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r-npmr
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public |
Fit multinomial logistic regression with a penalty on the nuclear norm of the estimated regression coefficient matrix, using proximal gradient descent.
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2024-01-16 |
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r-nricens
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public |
Calculating the net reclassification improvement (NRI) for risk prediction models with time to event and binary data.
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2024-01-16 |
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r-nptest
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public |
Robust nonparametric bootstrap and permutation tests for location, correlation, and regression problems, as described in Helwig (2019a) <doi:10.1002/wics.1457> and Helwig (2019b) <doi:10.1016/j.neuroimage.2019.116030>. Univariate and multivariate tests are supported. For each problem, exact tests and Monte Carlo approximations are available. Five different nonparametric bootstrap confidence intervals are implemented. Parallel computing is implemented via the 'parallel' package.
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2024-01-16 |
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r-npreg
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public |
Multiple and generalized nonparametric regression using smoothing spline ANOVA models and generalized additive models, as described in Helwig (2020) <doi:10.4135/9781526421036885885>. Includes support for Gaussian and non-Gaussian responses, smoothers for multiple types of predictors, interactions between smoothers of mixed types, eight different methods for smoothing parameter selection, and flexible tools for prediction and inference.
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2024-01-16 |
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r-nppbib
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public |
Implements a nonparametric statistical test for rank or score data from partially-balanced incomplete block-design experiments.
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2024-01-16 |
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r-npordtests
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public |
Performs nonparametric tests for equality of location against ordered alternatives.
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2024-01-16 |
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r-npmv
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public |
Performs analysis of one-way multivariate data, for small samples using Nonparametric techniques. Using approximations for ANOVA Type, Wilks' Lambda, Lawley Hotelling, and Bartlett Nanda Pillai Test statics, the package compares the multivariate distributions for a single explanatory variable. The comparison is also performed using a permutation test for each of the four test statistics. The package also performs an all-subsets algorithm regarding variables and regarding factor levels.
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2024-01-16 |
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r-nphazardrate
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public |
Provides functions and examples for histogram, kernel (classical, variable bandwidth and transformations based), discrete and semiparametric hazard rate estimators.
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2024-01-16 |
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r-npmlecmprsk
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public |
Given a failure type, the function computes covariate-specific probability of failure over time and covariate-specific conditional hazard rate based on possibly right-censored competing risk data. Specifically, it computes the non-parametric maximum-likelihood estimates of these quantities and their asymptotic variances in a semi-parametric mixture model for competing-risks data, as described in Chang et al. (2007a).
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2024-01-16 |
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r-npmlda
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public |
Support the book: Wu CO and Tian X (2018). Nonparametric Models for Longitudinal Data. Chapman & Hall/CRC (to appear); and provide fit for using global and local smoothing methods for the conditional-mean and conditional-distribution based models with longitudinal Data.
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2024-01-16 |
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r-nplr
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public |
Performing drug response analyses and IC50 estimations using n-Parameter logistic regression. Can also be applied to proliferation analyses.
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2024-01-16 |
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r-npde
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public |
Provides routines to compute normalised prediction distribution errors, a metric designed to evaluate non-linear mixed effect models such as those used in pharmacokinetics and pharmacodynamics.
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2024-01-16 |
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r-npexact
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public |
Provides several novel exact hypothesis tests with minimal assumptions on the errors. The tests are exact, meaning that their p-values are correct for the given sample sizes (the p-values are not derived from asymptotic analysis). The test for stochastic inequality is for ordinal comparisons based on two independent samples and requires no assumptions on the errors. The other tests include tests for the mean and variance of a single sample and comparing means in independent samples. All these tests only require that the data has known bounds (such as percentages that lie in [0,100]. These bounds are part of the input.
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2024-01-16 |
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r-nplplot
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public |
Provides routines for plotting linkage and association results along a chromosome, with marker names displayed along the top border. There are also routines for generating BED and BedGraph custom tracks for viewing in the UCSC genome browser. The data reformatting program Mega2 uses this package to plot output from a variety of programs.
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2024-01-16 |
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r-npcd
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public |
An array of nonparametric and parametric estimation methods for cognitive diagnostic models, including nonparametric classification of examinee attribute profiles, joint maximum likelihood estimation (JMLE) of examinee attribute profiles and item parameters, and nonparametric refinement of the Q-matrix, as well as conditional maximum likelihood estimation (CMLE) of examinee attribute profiles given item parameters and CMLE of item parameters given examinee attribute profiles. Currently the nonparametric methods in the package support both conjunctive and disjunctive models, and the parametric methods in the package support the DINA model, the DINO model, the NIDA model, the G-NIDA model, and the R-RUM model.
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2024-01-16 |
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r-nonpar
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public |
Contains the following 5 nonparametric hypothesis tests: The Sign Test, The 2 Sample Median Test, Miller's Jackknife Procedure, Cochran's Q Test, & The Stuart-Maxwell Test.
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2024-01-16 |
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r-nparsurv
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public |
Nonparametric Tests for Main Effects, Simple Effects and Interaction Effect with Censored Data and Two Factorial Influencing Variables.
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2024-01-16 |
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r-nparld
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public |
Performs nonparametric analysis of longitudinal data in factorial experiments. Longitudinal data are those which are collected from the same subjects over time, and they frequently arise in biological sciences. Nonparametric methods do not require distributional assumptions, and are applicable to a variety of data types (continuous, discrete, purely ordinal, and dichotomous). Such methods are also robust with respect to outliers and for small sample sizes.
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2024-01-16 |
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r-nparcomp
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public |
With this package, it is possible to compute nonparametric simultaneous confidence intervals for relative contrast effects in the unbalanced one way layout. Moreover, it computes simultaneous p-values. The simultaneous confidence intervals can be computed using multivariate normal distribution, multivariate t-distribution with a Satterthwaite Approximation of the degree of freedom or using multivariate range preserving transformations with Logit or Probit as transformation function. 2 sample comparisons can be performed with the same methods described above. There is no assumption on the underlying distribution function, only that the data have to be at least ordinal numbers. See Konietschke et al. (2015) <doi:10.18637/jss.v064.i09> for details.
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2024-01-16 |
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r-nozzle.r1
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public |
The Nozzle package provides an API to generate HTML reports with dynamic user interface elements based on JavaScript and CSS (Cascading Style Sheets). Nozzle was designed to facilitate summarization and rapid browsing of complex results in data analysis pipelines where multiple analyses are performed frequently on big data sets. The package can be applied to any project where user-friendly reports need to be created.
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2024-01-16 |
