| Package Name | Access | Summary | Updated |
|---|---|---|---|
| bedr | public | Genomic Region Processing using Tools Such as BEDtools, BEDOPS and Tabix | 2025-03-25 |
| matrixeqtl | public | Ultra fast eQTL analysis via large matrix operations | 2025-03-25 |
| parcel | public | A high performance HTTP download client that leverages the speed of UDP without sacrificing reliability. | 2025-03-25 |
| intervaltree | public | A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment. | 2025-03-25 |
| gdc-client | public | GDC Data Transfer Tool | 2025-03-25 |
| r-forge-coseq | public | Co-Expression Analysis of Sequencing Data | 2025-03-25 |
| r-htscluster | public | Clustering High-Throughput Transcriptome Sequencing (HTS) Data | 2025-03-25 |
| bioconductor-htsfilter | public | Filter replicated high-throughput transcriptome sequencing data | 2025-03-25 |
| r-rmixmod | public | Supervised, Unsupervised, Semi-Supervised Classification with MIXture MODelling (Interface of MIXMOD Software) | 2025-03-25 |
| r-capushe | public | CAlibrating Penalities Using Slope HEuristics | 2025-03-25 |
| bioconductor-genomewidesnp6crlmm | public | Metadata for fast genotyping with the 'crlmm' package | 2025-03-25 |
| bioconductor-crlmm | public | Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays | 2025-03-25 |
| bioconductor-snpchip | public | Visualizations for copy number alterations | 2025-03-25 |
| bioconductor-oligoclasses | public | Classes for high-throughput arrays supported by oligo and crlmm | 2025-03-25 |
| matryoshka | public | Methods for the automated discovery of hierarchically-structured chromatin domains | 2025-03-25 |
| snvsniffer | public | SNVSniffer is an efficient and integrated caller identifying both germline and somatic SNVs/indels from NGS data. | 2025-03-25 |
| nextgenmap | public | No Summary | 2025-03-25 |
| cosmos | public | Somatic Large Structural Variation Detector | 2025-03-25 |
| genseng | public | Copy Number Variation Detection Tool | 2025-03-25 |
| yeppp | public | libs are installed in $PREFIX/lib. header files are installed in $PREFIX/include/yeppp | 2025-03-25 |
| composer | public | Dependency Manager for PHP | 2025-03-25 |
| php | public | php 5.6.27 with curl, openssl and zlib enabled | 2025-03-25 |
