petrnovak
by Petr Novak
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| dante | 0.2.10 | DANTE is a program for identification of transposable elements protein coding sequences using REXdb database | Oct 8, 2025 | GNU GPL v3 |
| dante_ltr | 0.4.0.12 | DANTE_LTR — domain-based identification of complete LTR retrotransposons and solo LTRs from DANTE annotation. | Apr 18, 2026 | GPL-3.0-only |
| dante_tir | 0.2.5 | DANTE_TIR identifies full-length DNA transposons with Terminal Inverted Repeats (TIRs), starting from DANTE annotations of conserved transposase domains. | Apr 28, 2026 | GPL-3.0-only |
| r-seqgrapher | 0.5.0.2.3 | The SeqGrapheR package provide interactive GUI for visualization of DNA sequence clusters. Details and principles of usage are described in user manual and (2010 BMC Bioinformatics 11:378). For full functionality installed NCBI blast is required. | Mar 25, 2025 | GPL (>= 2) |
| tidecluster | 1.8.3 | TideCluster is a wrapper for TideHunter for identifying and characterizing tandem repeats in genome assemblies. It clusters similar repeats using MMseqs2 and BLAST, annotates them with RepeatMasker, and analyzes them with TAREAN. | Apr 18, 2026 | GPL-3.0-only |
| tidehunter | 1.4.3 | TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain | Mar 25, 2025 | MIT |