tidecluster
TideCluster is a wrapper for TideHunter for identifying and characterizing tandem repeats in genome assemblies. It clusters similar repeats using MMseqs2 and BLAST, annotates them with RepeatMasker, and analyzes them with TAREAN.
Installation
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About
Summary
TideCluster is a wrapper for TideHunter for identifying and characterizing tandem repeats in genome assemblies. It clusters similar repeats using MMseqs2 and BLAST, annotates them with RepeatMasker, and analyzes them with TAREAN.
Last Updated
Apr 18, 2026 at 16:34
License
GPL-3.0-only
Supported Platforms
noarch
Unsupported Platforms
linux-64 Last supported version: 1.8.2
GitHub Repository
https://github.com/kavonrtep/TideCluster