| Package Name | Access | Summary | Updated |
|---|---|---|---|
| oncokb-annotator | public | Annotates variants in MAF with OncoKB annotation. | 2025-09-25 |
| r-pcgrr | public | Personal Cancer Genome ReporteR. Functions, tools and utilities for the generation of clinical cancer genome reports with PCGR. This R package is an integrated part of the Docker/Conda-based PCGR workflow (https://github.com/sigven/pcgr), it should thus not be used as a stand-alone package. | 2025-09-23 |
| pcgr | public | None | 2025-09-23 |
| r-cpsr | public | Cancer Predisposition Sequencing Reporter | 2025-09-17 |
| cacao_dockerized | public | Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer | 2025-03-25 |
| cacao | public | Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer | 2025-03-25 |
| cpsr_dockerized | public | Cancer Predisposition Sequencing Reporter (CPSR) - prioritization of germline variants in cancer | 2025-03-25 |
| cpsr | public | Cancer Predisposition Sequencing Reporter (CPSR) - prioritization of germline variants in cancer | 2025-03-25 |
| pcgr_dockerized | public | Personal Cancer Genome Reporter (PCGR) - variant interpretation report for precision cancer medicine | 2025-03-25 |
| gdown | public | Google Drive direct download of big files. | 2025-03-25 |
| r-sunburstr | public | Make interactive 'd3.js' sequence sunburst diagrams in R with the convenience and infrastructure of an 'htmlwidget'. | 2025-03-25 |
| r-summarywidget | public | SummaryWidget displays a single statistic derived from a linked table. It's primary use is with the crosstalk package. Used with crosstalk, a summarywidget displays a value which updates as the data selection changes. | 2025-03-25 |
| r-rlogging | public | A simple logging facility that extends R's message(), warning(), and stop() functions. | 2025-03-25 |
| r-configr | public | Implements the JSON, INI, YAML and TOML parser for R setting and writing of configuration file. The functionality of this package is similar to that of package 'config'. | 2025-03-25 |
