|
stec_kma
|
public |
No Summary
|
2025-05-20 |
|
azure_batch
|
public |
AzureBatch is a Python-based suite of tools designed for the creation of pools, jobs and tasks in an Azure batch account
|
2025-05-05 |
|
skesa
|
public |
Strategic Kmer Extension for Scrupulous Assemblies
|
2025-03-25 |
|
quast
|
public |
Quality Assessment Tool for Genome Assemblies
|
2025-03-25 |
|
amr_summary
|
public |
AMR Summary: a pipeline to identify AMR resistance genes located on plasmids by combining ResFinder and MOB-recon
|
2025-03-25 |
|
azure_storage
|
public |
CFIA OLC Azure storage scripts
|
2025-03-25 |
|
allelefinder
|
public |
Allele Tools
|
2025-03-25 |
|
confindr
|
public |
Detect intra- and inter-species bacterial contamination in NGS reads
|
2025-03-25 |
|
cowsnphr
|
public |
Single Nucleotide Variant Calling Pipeline
|
2025-03-25 |
|
seqsero2
|
public |
Salmonella serotype prediction from genome sequencing data
|
2025-03-25 |
|
sistr_cmd
|
public |
Salmonella In Silico Typing Resource (SISTR) commandline tool for serovar prediction. This version has requirements pinned to be compatible with the CFIA COWBAT pipeline. Please use the bioconda version.
|
2025-03-25 |
|
sigseekr
|
public |
No Summary
|
2025-03-25 |
|
mob_suite
|
public |
This package MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies. The MOB-suite is designed to be a modular set of tools for the typing and reconstruction of plasmid sequences from WGS assemblies.
|
2025-03-25 |
|
virus_typer
|
public |
Perform virus typing on Norovirus genogroups I and II, as well as Hepatitis A
|
2025-03-25 |
|
vsnp
|
public |
vSNP - bacterial validation SNP analysis tool
|
2025-03-25 |
|
validator_helper
|
public |
Package to help validate that CSVs outputted by your pipelines match up with what you think they should.
|
2025-03-25 |
|
in_silico_pcr
|
public |
Perform in silico PCR analyses on FASTA- and/or FASTQ-formatted files
|
2025-03-25 |
|
genomeqaml
|
public |
CFIA OLC Genome Quality Assessment with Machine Learning
|
2025-03-25 |
|
genewrappers
|
public |
Python wrappers for bioinformatic tools
|
2025-03-25 |
|
genemethods
|
public |
Common methods for object oriented gene target finding software
|
2025-03-25 |
|
cowbat
|
public |
CFIA OLC Workflow for Bacterial Assembly and Typing
|
2025-03-25 |
|
geneseekr
|
public |
Object oriented gene target finding software
|
2025-03-25 |
|
olctools
|
public |
Python package for commonly used tools at OLC
|
2025-03-25 |
|
sipprverse
|
public |
Object oriented raw read typing software
|
2025-03-25 |
