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in_silico_pcr

Community

Perform in silico PCR analyses on FASTA- and/or FASTQ-formatted files

Installation

To install this package, run one of the following:

Conda
$conda install olcbioinformatics::in_silico_pcr

Usage Tracking

0.0.3.5
0.0.3.1
0.0.3.0
0.0.2.9
0.0.2.8
5 / 8 versions selected
Total downloads: 0

Description

This performs in silico PCRs from .fastq(.gz) or .fasta files using primer sequences. The script uses bbduk to bait reads containing the primer sequences and assembles valid PCR products.

About

Summary

Perform in silico PCR analyses on FASTA- and/or FASTQ-formatted files

Information Last Updated

Sep 3, 2025 at 16:00

License

MIT

Total Downloads

183

Platforms

noarch Version: 0.0.3.5