| Package Name | Access | Summary | Updated |
|---|---|---|---|
| trident | public | No Summary | 2025-05-20 |
| spatialge | public | No Summary | 2025-05-16 |
| squidpy | public | Squidpy - Spatial Single Cell Analysis in Python | 2025-03-25 |
| vitessce | public | Jupyter widget facilitating interactive visualization of spatial single-cell data with Vitessce | 2025-03-25 |
| scimap | public | Spatial Single-Cell Analysis Toolkit | 2025-03-25 |
| star-fusion | public | STAR-Fusion fusion variant caller. All dependencies required to run FusionInspector and FusionAnnotator are included. | 2025-03-25 |
| pytiff | public | A libtiff wrapper to read tiled tiff images | 2025-03-25 |
| mxnet-cu102 | public | Apache MXNet is a deep learning framework designed for both efficiency and flexibility | 2025-03-25 |
| mxnet-mkl | public | Apache MXNet is a deep learning framework designed for both efficiency and flexibility | 2025-03-25 |
| opencv-python-headless | public | opencv python headless | 2025-03-25 |
| naivestates | public | naivestates is a label-free, cluster-free tool for inferring cell types from quantified marker expression data | 2025-03-25 |
| naivestatess | public | naivestates is a label-free, cluster-free tool for inferring cell types from quantified marker expression data | 2025-03-25 |
| ashlar | public | Alignment by Simultaneous Harmonization of Layer/Adjacency Registration | 2025-03-25 |
| cellpose | public | anatomical segmentation algorithm | 2025-03-25 |
| mcmicro-ilastik | public | mcmicro module for training and processing large images with Ilastik | 2025-03-25 |
| basic-illumination | public | ImageJ BaSiC shading correction for use with Ashlar. | 2025-03-25 |
| gatk4-python | public | Genome Analysis Toolkit (GATK4) | 2025-03-25 |
| kbmtl | public | Kernalized Baysian Multi-task Transfer Learning from breast cancer cell lines | 2025-03-25 |
| aracne-ap | public | No Summary | 2025-03-25 |
| epic | public | EPIC is a method to estimate the proportion of immune, stromal, endothelial and cancer or other cells from bulk gene expression data. | 2025-03-25 |
| tcr.diversity.analysis | public | No Summary | 2025-03-25 |
| r-writexl | public | Zero-dependency and data frame to xlsx exporter based on 'libxlsxwriter'. Fast and no Java or Excel required. | 2025-03-25 |
| normalize.clonotype.counts | public | No Summary | 2025-03-25 |
| count.spikes.centos | public | No Summary | 2025-03-25 |
| count.spikes | public | No Summary | 2025-03-25 |
