TORMES is a pipeline that requires a lot of dependencies to work. It has been devised to be used as a conda environment. For installing TORMES an all its dependencies run:

wget https://anaconda.org/nmquijada/tormes-1.3.0/2021.06.08.113021/download/tormes-1.3.0.yml
conda env create -n tormes-1.3.0 --file tormes-1.3.0.yml

To activate TORMES environment run:

conda activate tormes-1.3.0

Additionally, the first time you are using TORMES, run (after activating TORMES environment):

tormes-setup

Please visit TORMES GitHub page for further instructions.