| Package Name | Access | Summary | Updated |
|---|---|---|---|
| aplanat | public | Bokeh plotting API, with bio-focussed extras. | 2025-03-25 |
| sigfig | public | Python library for rounding numbers (with expected results) | 2025-03-25 |
| kraken2-server | public | Server implementation of kraken2 | 2025-03-25 |
| stringtie | public | StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. | 2025-03-25 |
| modbam2bed | public | Summarise BAM files containing modified-base information to bedMethyl format. | 2025-03-25 |
| gffcompare | public | GffCompare by Geo Pertea | 2025-03-25 |
| bcftools | public | BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. Most commands accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed VCF and BCF and streams will work in most, but not all situations. | 2025-03-25 |
| libsass | public | A straightforward binding of libsass for Python. Compile Sass/SCSS in Python with no Ruby stack at all! | 2025-03-25 |
| flye | public | Fast and accurate de novo assembler for single molecule sequencing reads | 2025-03-25 |
| seqkit | public | a cross-platform and ultrafast toolkit for FASTA/Q file manipulation | 2025-03-25 |
| minimap2 | public | A versatile pairwise aligner for genomic and spliced nucleotide sequences. | 2025-03-25 |
| samtools | public | Tools for dealing with SAM, BAM and CRAM files | 2025-03-25 |
| htslib | public | C library for high-throughput sequencing data formats. | 2025-03-25 |
| pysam | public | Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix. | 2025-03-25 |
