| Package Name | Access | Summary | Updated |
|---|---|---|---|
| fastcat | public | Concatenate fast/a/q/gz and calculate basic statistics | 2025-09-18 |
| htslib | public | C library for high-throughput sequencing data formats. | 2025-09-10 |
| modkit | public | A toolkit for working with modified-base data stored within BAM files. | 2025-09-09 |
| medaka | public | Neural network sequence error correction. | 2025-08-19 |
| pyspoa | public | Python binding to spoa library. | 2025-08-15 |
| percula | public | A CLI tool for preprocessing ONT and postprocessing SpaceRanger data | 2025-06-27 |
| epi2melabs | public | Helper library for miscellaneous EPI2ME Labs functionality | 2025-06-27 |
| ezcharts | public | eCharts plotting API | 2025-06-20 |
| ont-spectre | public | Oxford Nanopore Technologies Plc. fork of Spectre CNV caller | 2025-05-02 |
| pod5 | public | POD5 is a file format for storing nanopore dna data in an easily accessible way. The format is able to be written in a streaming manner which allows a sequencing instrument to directly write the format. | 2025-03-25 |
| np-artic | public | No Summary | 2025-03-25 |
| longphase | public | LongPhase is an ultra-fast program for simultaneously co-phasing SNPs, small indels, large SVs, and (5mC) modifications for Nanopore and PacBio platforms. | 2025-03-25 |
| perl-io-compress | public | IO Interface to compressed data files/buffers | 2025-03-25 |
| perl-compress-raw-bzip2 | public | Low-Level Interface to bzip2 compression library | 2025-03-25 |
| perl-compress-raw-zlib | public | Basic utilities for writing tests. | 2025-03-25 |
| perl-json-xs | public | JSON serialising/deserialising, done correctly and fast | 2025-03-25 |
| whatshap | public | phase genomic variants using DNA sequencing reads (haplotype assembly) | 2025-03-25 |
| time | public | time command from GNU | 2025-03-25 |
| perl-params-validate | public | Validate method/function parameters | 2025-03-25 |
| perl-encode | public | character encodings in Perl | 2025-03-25 |
| xopen | public | Open compressed files transparently in Python | 2025-03-25 |
| perl-data-dumper | public | seeds germane, yet not germinated | 2025-03-25 |
| perl-list-moreutils-xs | public | Provide the stuff missing in List::Util in XS | 2025-03-25 |
| perl-pathtools | public | Tools for working with directory and file names | 2025-03-25 |
| perl-storable | public | persistence for Perl data structures | 2025-03-25 |
