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r-config
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public |
Manage configuration values across multiple environments (e.g. development, test, production). Read values using a function that determines the current environment and returns the appropriate value.
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2025-03-25 |
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r-commonmark
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public |
The CommonMark specification defines a rationalized version of markdown syntax. This package uses the 'cmark' reference implementation for converting markdown text into various formats including html, latex and groff man. In addition it exposes the markdown parse tree in xml format. The latest version of this package also adds support for Github extensions including tables, autolinks and strikethrough text.
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2025-03-25 |
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r-colorspace
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public |
Carries out mapping between assorted color spaces including RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB and polar CIELAB. Qualitative, sequential, and diverging color palettes based on HCL colors are provided along with an interactive palette picker (with either a Tcl/Tk or a shiny GUI).
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2025-03-25 |
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r-coin
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public |
Conditional inference procedures for the general independence problem including two-sample, K-sample (non-parametric ANOVA), correlation, censored, ordered and multivariate problems.
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2025-03-25 |
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r-coda
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public |
Provides functions for summarizing and plotting the output from Markov Chain Monte Carlo (MCMC) simulations, as well as diagnostic tests of convergence to the equilibrium distribution of the Markov chain.
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2025-03-25 |
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r-clipr
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public |
Simple utility functions to read from and write to the Windows, OS X, and X11 clipboards.
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2025-03-25 |
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r-cli
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public |
A suite of tools designed to build attractive command line interfaces ('CLIs'). Includes tools for drawing rules, boxes, trees, and 'Unicode' symbols with 'ASCII' alternatives.
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2025-03-25 |
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r-classint
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public |
Selected commonly used methods for choosing univariate class intervals for mapping or other graphics purposes.
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2025-03-25 |
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r-chron
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public |
Provides chronological objects which can handle dates and times.
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2025-03-25 |
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r-checkmate
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public |
Tests and assertions to perform frequent argument checks. A substantial part of the package was written in C to minimize any worries about execution time overhead.
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2025-03-25 |
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r-cellranger
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public |
Helper functions to work with spreadsheets and the "A1:D10" style of cell range specification.
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2025-03-25 |
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r-catools
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public |
Contains several basic utility functions including: moving (rolling, running) window statistic functions, read/write for GIF and ENVI binary files, fast calculation of AUC, LogitBoost classifier, base64 encoder/decoder, round-off-error-free sum and cumsum, etc.
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2025-03-25 |
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r-caret
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public |
Misc functions for training and plotting classification and regression models.
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2025-03-25 |
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r-car
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public |
Functions to Accompany J. Fox and S. Weisberg, An R Companion to Applied Regression, Third Edition, Sage, in press.
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2025-03-25 |
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r-callr
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public |
It is sometimes useful to perform a computation in a separate R process, without affecting the current R process at all. This packages does exactly that.
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2025-03-25 |
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r-cairo
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public |
Cairo graphics device that can be use to create high-quality vector (PDF, PostScript and SVG) and bitmap output (PNG,JPEG,TIFF), and high-quality rendering in displays (X11 and Win32). Since it uses the same back-end for all output, copying across formats is WYSIWYG. Files are created without the dependence on X11 or other external programs. This device supports alpha channel (semi-transparent drawing) and resulting images can contain transparent and semi-transparent regions. It is ideal for use in server environments (file output) and as a replacement for other devices that don't have Cairo's capabilities such as alpha support or anti-aliasing. Backends are modular such that any subset of backends is supported.
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2025-03-25 |
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r-broom
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public |
Convert statistical analysis objects from R into tidy data frames, so that they can more easily be combined, reshaped and otherwise processed with tools like 'dplyr', 'tidyr' and 'ggplot2'. The package provides three S3 generics: tidy, which summarizes a model's statistical findings such as coefficients of a regression; augment, which adds columns to the original data such as predictions, residuals and cluster assignments; and glance, which provides a one-row summary of model-level statistics.
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2025-03-25 |
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r-brglm
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public |
Fit generalized linear models with binomial responses using either an adjusted-score approach to bias reduction or maximum penalized likelihood where penalization is by Jeffreys invariant prior. These procedures return estimates with improved frequentist properties (bias, mean squared error) that are always finite even in cases where the maximum likelihood estimates are infinite (data separation). Fitting takes place by fitting generalized linear models on iteratively updated pseudo-data. The interface is essentially the same as 'glm'. More flexibility is provided by the fact that custom pseudo-data representations can be specified and used for model fitting. Functions are provided for the construction of confidence intervals for the reduced-bias estimates.
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2025-03-25 |
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r-brew
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public |
brew implements a templating framework for mixing text and R code for report generation. brew template syntax is similar to PHP, Ruby's erb module, Java Server Pages, and Python's psp module.
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2025-03-25 |
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r-bradleyterry2
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public |
Specify and fit the Bradley-Terry model, including structured versions in which the parameters are related to explanatory variables through a linear predictor and versions with contest-specific effects, such as a home advantage.
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2025-03-25 |
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r-blob
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public |
R's raw vector is useful for storing a single binary object. What if you want to put a vector of them in a data frame? The 'blob' package provides the blob object, a list of raw vectors, suitable for use as a column in data frame.
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2025-03-25 |
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r-bitops
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public |
Functions for bitwise operations on integer vectors.
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2025-03-25 |
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r-bit64
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public |
Package 'bit64' provides serializable S3 atomic 64bit (signed) integers. These are useful for handling database keys and exact counting in +-2^63. WARNING: do not use them as replacement for 32bit integers, integer64 are not supported for subscripting by R-core and they have different semantics when combined with double, e.g. integer64 + double => integer64. Class integer64 can be used in vectors, matrices, arrays and data.frames. Methods are available for coercion from and to logicals, integers, doubles, characters and factors as well as many elementwise and summary functions. Many fast algorithmic operations such as 'match' and 'order' support inter- active data exploration and manipulation and optionally leverage caching.
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2025-03-25 |
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r-bit
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public |
bitmapped vectors of booleans (no NAs), coercion from and to logicals, integers and integer subscripts; fast boolean operators and fast summary statistics. With 'bit' vectors you can store true binary booleans {FALSE,TRUE} at the expense of 1 bit only, on a 32 bit architecture this means factor 32 less RAM and ~ factor 32 more speed on boolean operations. Due to overhead of R calls, actual speed gain depends on the size of the vector: expect gains for vectors of size > 10000 elements. Even for one-time boolean operations it can pay-off to convert to bit, the pay-off is obvious, when such components are used more than once. Reading from and writing to bit is approximately as fast as accessing standard logicals - mostly due to R's time for memory allocation. The package allows to work with pre-allocated memory for return values by calling .Call() directly: when evaluating the speed of C-access with pre-allocated vector memory, coping from bit to logical requires only 70% of the time for copying from logical to logical; and copying from logical to bit comes at a performance penalty of 150%. the package now contains further classes for representing logical selections: 'bitwhich' for very skewed selections and 'ri' for selecting ranges of values for chunked processing. All three index classes can be used for subsetting 'ff' objects (ff-2.1-0 and higher).
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2025-03-25 |
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r-bindrcpp
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public |
Provides an easy way to fill an environment with active bindings that call a C++ function.
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2025-03-25 |
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r-bindr
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public |
Provides a simple interface for creating active bindings where the bound function accepts additional arguments.
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2025-03-25 |
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r-bh
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public |
Boost provides free peer-reviewed portable C++ source libraries. A large part of Boost is provided as C++ template code which is resolved entirely at compile-time without linking. This package aims to provide the most useful subset of Boost libraries for template use among CRAN package. By placing these libraries in this package, we offer a more efficient distribution system for CRAN as replication of this code in the sources of other packages is avoided. As of release 1.65.0-1, the following Boost libraries are included: 'algorithm' 'align' 'any' 'atomic' 'bimap' 'bind' 'circular_buffer' 'compute' 'concept' 'config' 'container' 'date'_'time' 'detail' 'dynamic_bitset' 'exception' 'filesystem' 'flyweight' 'foreach' 'functional' 'fusion' 'geometry' 'graph' 'heap' 'icl' 'integer' 'interprocess' 'intrusive' 'io' 'iostreams' 'iterator' 'math' 'move' 'mpl' 'multiprcecision' 'numeric' 'pending' 'phoenix' 'preprocessor' 'propery_tree' 'random' 'range' 'scope_exit' 'smart_ptr' 'sort' 'spirit' 'tuple' 'type_traits' 'typeof' 'unordered' 'utility' 'uuid'.
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2025-03-25 |
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r-bestglm
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public |
Best subset glm using information criteria or cross-validation. Implements PCR and PLS using AIC/BIC. Implements one-standard deviation rule for use with the `caret` package.
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2025-03-25 |
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r-bdsmatrix
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public |
This is a special case of sparse matrices, used by coxme.
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2025-03-25 |
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r-bcp
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public |
Provides an implementation of the Barry and Hartigan (1993) product partition model for the normal errors change point problem using Markov Chain Monte Carlo. It also extends the methodology to regression models on a connected graph (Wang and Emerson, 2015); this allows estimation of change point models with multivariate responses. Parallel MCMC, previously available in bcp v.3.0.0, is currently not implemented.
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2025-03-25 |
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r-base64enc
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public |
This package provides tools for handling base64 encoding. It is more flexible than the orphaned base64 package.
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2025-03-25 |
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r-backports
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public |
Implementations of functions which have been introduced in R since version 3.0.0. The backports are conditionally exported which results in R resolving the function names to the version shipped with R (if available) and uses the implemented backports as fallback. This way package developers can make use of the new functions without worrying about the minimum required R version.
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2025-03-25 |
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r-assertthat
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public |
assertthat is an extension to stopifnot() that makes it easy to declare the pre and post conditions that you code should satisfy, while also producing friendly error messages so that your users know what they've done wrong.
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2025-03-25 |
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r-argparse
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public |
A command line parser to be used with Rscript to write "#!" shebang scripts that gracefully accept positional and optional arguments and automatically generate usage.
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2025-03-25 |
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r-ape
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public |
Functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.
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2025-03-25 |
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r-anomalydetection
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public |
Implements procedures developed by Gutierrez et al. (2017, <https://journal.r-project.org/archive/2017/RJ-2017-039/index.html>) to aid in detecting network log anomalies. By combining various multivariate analytic approaches relevant to network anomaly detection, it provides cyber analysts efficient means to detect suspected anomalies requiring further evaluation.
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2025-03-25 |
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r-afex
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public |
Convenience functions for analyzing factorial experiments using ANOVA or mixed models. aov_ez(), aov_car(), and aov_4() allow specification of between, within (i.e., repeated-measures), or mixed between-within (i.e., split-plot) ANOVAs for data in long format (i.e., one observation per row), aggregating multiple observations per individual and cell of the design. mixed() fits mixed models using lme4::lmer() and computes p-values for all fixed effects using either Kenward-Roger or Satterthwaite approximation for degrees of freedom (LMM only), parametric bootstrap (LMMs and GLMMs), or likelihood ratio tests (LMMs and GLMMs). afex uses type 3 sums of squares as default (imitating commercial statistical software).
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2025-03-25 |
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r-aer
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public |
Functions, data sets, examples, demos, and vignettes for the book Christian Kleiber and Achim Zeileis (2008), Applied Econometrics with R, Springer-Verlag, New York. ISBN 978-0-387-77316-2. (See the vignette "AER" for a package overview.)
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2025-03-25 |
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r-adgoftest
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public |
Anderson-Darling GoF test with p-value calculation based on Marsaglia's 2004 paper "Evaluating the Anderson-Darling Distribution"
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2025-03-25 |
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r-acepack
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public |
Two nonparametric methods for multiple regression transform selection are provided. The first, Alternative Conditional Expectations (ACE), is an algorithm to find the fixed point of maximal correlation, i.e. it finds a set of transformed response variables that maximizes R^2 using smoothing functions [see Breiman, L., and J.H. Friedman. 1985. "Estimating Optimal Transformations for Multiple Regression and Correlation". Journal of the American Statistical Association. 80:580-598. <doi:10.1080/01621459.1985.10478157>]. Also included is the Additivity Variance Stabilization (AVAS) method which works better than ACE when correlation is low [see Tibshirani, R.. 1986. "Estimating Transformations for Regression via Additivity and Variance Stabilization". Journal of the American Statistical Association. 83:394-405. <doi:10.1080/01621459.1988.10478610>]. A good introduction to these two methods is in chapter 16 of Frank Harrel's "Regression Modeling Strategies" in the Springer Series in Statistics.
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2025-03-25 |
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mro-basics
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public |
No Summary
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2025-03-25 |
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r-survival
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public |
Contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.
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2025-03-25 |
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r-mgcv
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public |
Generalized additive (mixed) models, some of their extensions and other generalized ridge regression with multiple smoothing parameter estimation by (Restricted) Marginal Likelihood, Generalized Cross Validation and similar. Includes a gam() function, a wide variety of smoothers, JAGS support and distributions beyond the exponential family.
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2025-03-25 |
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r-doparallel
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public |
Provides a parallel backend for the %dopar% function using the parallel package.
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2025-03-25 |
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r-revoioq
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public |
Test suite for Microsoft R Services.
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2025-03-25 |
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r-nlme
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public |
Fit and compare Gaussian linear and nonlinear mixed-effects models.
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2025-03-25 |
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r-matrix
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public |
Classes and methods for dense and sparse matrices and operations on them using 'LAPACK' and 'SuiteSparse'.
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2025-03-25 |
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r-foreach
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public |
Support for the foreach looping construct. Foreach is an idiom that allows for iterating over elements in a collection, without the use of an explicit loop counter. This package in particular is intended to be used for its return value, rather than for its side effects. In that sense, it is similar to the standard lapply function, but doesn't require the evaluation of a function. Using foreach without side effects also facilitates executing the loop in parallel.
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2025-03-25 |
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r-class
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public |
Various functions for classification, including k-nearest neighbour, Learning Vector Quantization and Self-Organizing Maps.
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2025-03-25 |
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r-spatial
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public |
Functions for kriging and point pattern analysis.
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2025-03-25 |
