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MOSAIC / packages

Package Name Access Summary Updated
dxtr public Discrete Exterior Calculus library in Python. 2025-03-25
geoinfer3 public Geometric inference of surface tensions and cell pressures from a 3D tissue segmentation image 2025-03-25
maps_2d public A python package to compute and analyze 2D maps from discrete 3D data. 2025-03-25
developmental_registration public A Python library providing temporal and spatial registration tools for 3D+t sequences data 2025-03-25
timagetk_geometry public A Python library providing computational geometry tools for 3D images of multi-cellular tissues. 2025-03-25
lpy_tools public A set of tools to improve L-Py functionalities. 2025-03-25
lsm3d public Tools for segmenting 3D images of plant tissues at multiple scales using the level set method 2025-03-25
anifilters public Anisotropic filters which reinforce line-structures in 2D and planar structures in 3D 2025-03-25
bvpy public Package providing tools to solve BVP (Boundary Value Problem) and IBVP (Initial Boundary Value Problem). 2025-03-25
sam_atlas public No Summary 2025-03-25
simulation_core public Basic abstractions for the definition of simulation models on multi-cellular tissues 2025-03-25
ctrl public Cell Tracking and Robust Lineaging. 2025-03-25
geomtree public A package for treating trees augmented with 3D geometry. 2025-03-25
sam_spaghetti public No Summary 2025-03-25
visu_core public Generic methods and tools for data visualization in VTK, Matplotlib, plotly et al. 2025-03-25
femtk public Package providing tools to run FEM simulation on multi-cellular tissues 2025-03-25
cellfem public Package providing tools to run FEM simulation on multi-cellular tissues 2025-03-25
tissue_paredes public Polarity Analysis through Robust Extraction and Density Estimation of Signal at cell-wall level 2025-03-25
cellmesh public Meshing interface to gmsh for PropertyTopomesh and simple geometries 2025-03-25
tissue2d public Package to simulate growth, division and stiffening of 2D plant tissues 2025-03-25
artificial_tissue public No Summary 2025-03-25
treex public treex is a Python library for manipulating rooted trees. The trees can be ordered or not, with or without labels on their vertices. 2025-03-25
tissue_nukem_3d public A Python library for the detection and quantitative data extraction from microscopy images of cell nuclei. 2025-03-25
draco_stem public A Python library for the reconstruction of 3D meshes from segmented shoot apical meristem (SAM) tissue images. 2025-03-25
tissue_analysis public An Python library providing image analysis tools to extract quantitative information from 3D segmented tissue images. 2025-03-25

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