maximinio
by Luca Massimino
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| macs3 | 3.0.0a6 | Model Based Analysis for ChIP-Seq data | Mar 25, 2025 | BSD |
| r-scopeloomr | 0.3.1 | R package to build generic .loom files aligning with the default naming convention of the .loom format and to integrate other data types e.g.: regulons (SCENIC), clusters from Seurat, ... The package can also be used to extract data from .loom files. | Mar 25, 2025 | Apache-2 |
| r-scenic | 1.1.2_01 | SCENIC workflow | Mar 25, 2025 | file LICENSE |
| r-sankeyd3 | 0.2 | Creates 'D3' 'JavaScript' Sankey graphs from 'R'. | Mar 25, 2025 | GPL-3 |
| r-shinyfiletree | 0.0.0.9000 | This creates a widget with a shiny file tree. | Mar 25, 2025 | GPL-3 |
| r-pavian | 1.2.0 | R package and Shiny app to visualize and analyze metagenomics classification results from Kraken, Centrifuge and MetaPhlAn. | Mar 25, 2025 | GPL-3 |
| r-stringr | 1.4.0 | A consistent, simple and easy to use set of wrappers around the fantastic 'stringi' package. All function and argument names (and positions) are consistent, all functions deal with "NA"'s and zero length vectors in the same way, and the output from one function is easy to feed into the input of another. | Mar 25, 2025 | GPL-2 |
| r-matrix | 1.3_4 | A rich hierarchy of matrix classes, including triangular, symmetric, and diagonal matrices, both dense and sparse and with pattern, logical and numeric entries. Numerous methods for and operations on these matrices, using 'LAPACK' and 'SuiteSparse' libraries. | Mar 25, 2025 | GPL-2 |
| r-lattice | 0.20_45 | A powerful and elegant high-level data visualization system inspired by Trellis graphics, with an emphasis on multivariate data. Lattice is sufficient for typical graphics needs, and is also flexible enough to handle most nonstandard requirements. See ?Lattice for an introduction. | Mar 25, 2025 | GPL-2 |
| r-ggplot2 | 3.3.5 | A system for 'declaratively' creating graphics, based on "The Grammar of Graphics". You provide the data, tell 'ggplot2' how to map variables to aesthetics, what graphical primitives to use, and it takes care of the details. | Mar 25, 2025 | MIT |
| r-magrittr | 2.0.1 | Provides a mechanism for chaining commands with a new forward-pipe operator, %>%. This operator will forward a value, or the result of an expression, into the next function call/expression. There is flexible support for the type of right-hand side expressions. For more information, see package vignette. To quote Rene Magritte, "Ceci n'est pas un pipe." | Mar 25, 2025 | MIT |
| r-crayon | 1.4.1 | Colored terminal output on terminals that support 'ANSI' color and highlight codes. It also works in 'Emacs' 'ESS'. 'ANSI' color support is automatically detected. Colors and highlighting can be combined and nested. New styles can also be created easily. This package was inspired by the 'chalk' 'JavaScript' project. | Mar 25, 2025 | MIT |
| r-mass | 7.3_54 | Functions and datasets to support Venables and Ripley, "Modern Applied Statistics with S" (4th edition, 2002). | Mar 25, 2025 | GPL-2 | GPL-3 |
| r-tibble | 3.1.4 | Provides a 'tbl_df' class (the 'tibble') with stricter checking and better formatting than the traditional data frame. | Mar 25, 2025 | MIT |
| r-colorspace | 2.0_2 | Carries out mapping between assorted color spaces including RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB, and polar CIELAB. Qualitative, sequential, and diverging color palettes based on HCL colors are provided along with corresponding ggplot2 color scales. Color palette choice is aided by an interactive app (with either a Tcl/Tk or a shiny graphical user interface) and shiny apps with an HCL color picker and a color vision deficiency emulator. Plotting functions for displaying and assessing palettes include color swatches, visualizations of the HCL space, and trajectories in HCL and/or RGB spectrum. Color manipulation functions include: desaturation, lightening/darkening, mixing, and simulation of color vision deficiencies (deutanomaly, protanomaly, tritanomaly). Details can be found on the project web page at <https://colorspace.R-Forge.R-project.org/> and in the accompanying scientific paper: Zeileis et al. (2020, Journal of Statistical Software, <doi:10.18637/jss.v096.i01>). | Mar 25, 2025 | BSD_3_clause |
| r-rcolorbrewer | 1.1_2 | Provides color schemes for maps (and other graphics) designed by Cynthia Brewer as described at http://colorbrewer2.org | Mar 25, 2025 | Apache License 2.0 |
| r-xml | 3.99_0.8 | Many approaches for both reading and creating XML (and HTML) documents (including DTDs), both local and accessible via HTTP or FTP. Also offers access to an 'XPath' "interpreter". | Mar 25, 2025 | BSD_3_clause |
| r-lazyeval | 0.2.2 | An alternative approach to non-standard evaluation using formulas. Provides a full implementation of LISP style 'quasiquotation', making it easier to generate code with other code. | Mar 25, 2025 | GPL-3 |
| r-memoise | 2.0.0 | Cache the results of a function so that when you call it again with the same arguments it returns the pre-computed value. | Mar 25, 2025 | MIT |
| r-assertthat | 0.2.1 | An extension to stopifnot() that makes it easy to declare the pre and post conditions that you code should satisfy, while also producing friendly error messages so that your users know what's gone wrong. | Mar 25, 2025 | GPL-3 |
| r-dplyr | 1.0.7 | A fast, consistent tool for working with data frame like objects, both in memory and out of memory. | Mar 25, 2025 | MIT |
| r-httr | 1.4.2 | Useful tools for working with HTTP organised by HTTP verbs (GET(), POST(), etc). Configuration functions make it easy to control additional request components (authenticate(), add_headers() and so on). | Mar 25, 2025 | MIT |
| r-hms | 1.1.1 | Implements an S3 class for storing and formatting time-of-day values, based on the 'difftime' class. | Mar 25, 2025 | MIT |
| r-goplot | 1.0.2 | Implementation of multilayered visualizations for enhanced graphical representation of functional analysis data. It combines and integrates omics data derived from expression and functional annotation enrichment analyses. Its plotting functions have been developed with an hierarchical structure in mind: starting from a general overview to identify the most enriched categories (modified bar plot, bubble plot) to a more detailed one displaying different types of relevant information for the molecules in a given set of categories (circle plot, chord plot, cluster plot, Venn diagram, heatmap). | Mar 25, 2025 | GPL-2 |
| r-bitops | 1.0_7 | Functions for bitwise operations on integer vectors. | Mar 25, 2025 | GPL-2 |