| Package Name | Access | Summary | Updated |
|---|---|---|---|
| mira-multiome | public | Single-cell multiomics data analysis | 2025-03-25 |
| chromap | public | Fast alignment and preprocessing of chromatin profiles | 2025-03-25 |
| lisa2 | public | Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data. X. Shirley Liu Lab, 2020 | 2025-03-25 |
| maestro | public | MAESTRO(Model-based AnalysEs of Single-cell Transcriptome and RegulOme) is a comprehensive single-cell RNA-seq and ATAC-seq analysis suit built using snakemake. | 2025-03-25 |
