| Package Name | Access | Summary | Updated |
|---|---|---|---|
| genometools | public | The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. It is based on a C library named “libgenometools” which consists of several modules. | 2025-03-25 |
| r-cooccur | public | No Summary | 2025-03-25 |
| r-randomforest | public | Classification and regression based on a forest of trees using random inputs, based on Breiman (2001) <DOI:10.1023/A:1010933404324>. | 2025-03-25 |
| r-ranger | public | A fast implementation of Random Forests, particularly suited for high dimensional data. Ensembles of classification, regression, survival and probability prediction trees are supported. Data from genome-wide association studies can be analyzed efficiently. In addition to data frames, datasets of class 'gwaa.data' (R package 'GenABEL') and 'dgCMatrix' (R package 'Matrix') can be directly analyzed. | 2025-03-25 |
| r-mlr | public | Interface to a large number of classification and regression techniques, including machine-readable parameter descriptions. There is also an experimental extension for survival analysis, clustering and general, example-specific cost-sensitive learning. Generic resampling, including cross-validation, bootstrapping and subsampling. Hyperparameter tuning with modern optimization techniques, for single- and multi-objective problems. Filter and wrapper methods for feature selection. Extension of basic learners with additional operations common in machine learning, also allowing for easy nested resampling. Most operations can be parallelized. | 2025-03-25 |
| r-parallelmap | public | Unified parallelization framework for multiple back-end, designed for internal package and interactive usage. The main operation is a parallel "map" over lists. Supports local, multicore, mpi and BatchJobs mode. Allows "tagging" of the parallel operation with a level name that can be later selected by the user to switch on parallel execution for exactly this operation. | 2025-03-25 |
| r-paramhelpers | public | Functions for parameter descriptions and operations in black-box optimization, tuning and machine learning. Parameters can be described (type, constraints, defaults, etc.), combined to parameter sets and can in general be programmed on. A useful OptPath object (archive) to log function evaluations is also provided. | 2025-03-25 |
| r-fastmatch | public | Package providing a fast match() replacement for cases that require repeated look-ups. It is slightly faster that R's built-in match() function on first match against a table, but extremely fast on any subsequent lookup as it keeps the hash table in memory. | 2025-03-25 |
| r-bbmisc | public | Miscellaneous helper functions for and from B. Bischl and some other guys, mainly for package development. | 2025-03-25 |
| r-nlme | public | Fit and compare Gaussian linear and nonlinear mixed-effects models. | 2025-03-25 |
| bioconductor-curatedmetagenomicdata | public | No Summary | 2025-03-25 |
| bioconductor-experimenthub | public | No Summary | 2025-03-25 |
| r-spieceasi | public | No Summary | 2025-03-25 |
| r-huge | public | No Summary | 2025-03-25 |
| r-rcppcnpy | public | No Summary | 2025-03-25 |
| r-tax4fun | public | No Summary | 2025-03-25 |
| r-picante | public | No Summary | 2025-03-25 |
| r-caper | public | No Summary | 2025-03-25 |
| r-aptreeshape | public | No Summary | 2025-03-25 |
| r-checkmate | public | No Summary | 2025-03-25 |
| r-base64url | public | No Summary | 2025-03-25 |
| r-rfutilities | public | No Summary | 2025-03-25 |
| r-pez | public | No Summary | 2025-03-25 |
| r-fd | public | No Summary | 2025-03-25 |
| humann2 | public | No Summary | 2025-03-25 |
