pythoncyc
A Python interface to Pathway Tools
A Python interface to Pathway Tools
To install this package, run one of the following:
Copyright (c) 2014, SRI International
Permission is hereby granted, free of charge, to any person obtaining
a copy of this software and associated documentation files (the
"Software"), to deal in the Software without restriction, including
without limitation the rights to use, copy, modify, merge, publish,
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permit persons to whom the Software is furnished to do so, subject to
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The above copyright notice and this permission notice shall be
included in all copies or substantial portions of the Software.
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WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
PythonCyc 1.0, November 2014
============================
Overview
--------
The PythonCyc module provides a Python interface to a Pathway Tools
application running either locally or remotely. This module has been
designed to work on the three platforms supported by Pathway Tools:
Linux, Mac OS X, and Windows. Pathway Tools version 18.5 or
above is needed to use this module.
This module has been tested under Python 2.6 and 2.7, IPython 2.1 and
IPython notebook.
Installation
------------
Please, consult the HTML file tutorial.html under the doc directory of this
package for the installation instruction of PythonCyc and how to start
Pathway Tools to be able to use PythonCyc.
Documentation
-------------
1) For a tutorial on how to use PythonCyc, please consult the HTML file
tutorial.html under the doc directory of this package, or go directly
to the tutorial by clicking the following link https://github.com/latendre/PythonCyc/blob/master/doc/tutorial.md
2) For the API documentation of PythonCyc, please consult http://pythoncyc.readthedocs.org.
3) For the latest news about PythonCyc, please consult
http://bioinformatics.ai.sri.com/ptools/pythoncyc.html
Author
------
Mario Latendresse, [email protected]
License
-------
See file LICENSE.
Support
-------
For comments and/or bug reports, send an email to [email protected].
Acknowledgments
---------------
Thanks to Eli Bogart to have inspired some implementation details of
PythonCyc via PyCyc, Tomer Altman for the Pathway Tools API
documentation, and Daniel Weaver for suggesting to implement some
specific functions and his design, with Kai Chen, of the beautiful PythonCyc logo.
Summary
A Python interface to Pathway Tools
Last Updated
Nov 30, 2016 at 16:10
License
LICENSE
Supported Platforms