CMD + K

pythoncyc

Community

A Python interface to Pathway Tools

Installation

To install this package, run one of the following:

Pip
$pip install -i https://pypi.anaconda.org/leylabmpi/simple pythoncyc

Usage Tracking

1.0.3
1.0.2
1.0.1
1.0
4 / 8 versions selected
Downloads (Last 6 months): 0

Description

Copyright (c) 2014, SRI International

    Permission is hereby granted, free of charge, to any person obtaining
    a copy of this software and associated documentation files (the
    "Software"), to deal in the Software without restriction, including
    without limitation the rights to use, copy, modify, merge, publish,
    distribute, sublicense, and/or sell copies of the Software, and to
    permit persons to whom the Software is furnished to do so, subject to
    the following conditions:

    The above copyright notice and this permission notice shall be
    included in all copies or substantial portions of the Software.

    THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
    EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
    MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
    NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
    LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
    OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
    WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.


    PythonCyc 1.0, November 2014
    ============================

    Overview
    --------

    The PythonCyc module provides a Python interface to a Pathway Tools
    application running either locally or remotely. This module has been
    designed to work on the three platforms supported by Pathway Tools:
    Linux, Mac OS X, and Windows. Pathway Tools version 18.5 or
    above is needed to use this module.

    This module has been tested under Python 2.6 and 2.7, IPython 2.1 and
    IPython notebook.

    Installation
    ------------

    Please, consult the HTML file tutorial.html under the doc directory of this
    package for the installation instruction of PythonCyc and how to start
    Pathway Tools to be able to use PythonCyc.

    Documentation
    -------------

    1) For a tutorial on how to use PythonCyc, please consult the HTML file
    tutorial.html under the doc directory of this package, or go directly
    to the tutorial by clicking the following link https://github.com/latendre/PythonCyc/blob/master/doc/tutorial.md

    2) For the API documentation of PythonCyc, please consult http://pythoncyc.readthedocs.org. 

    3) For the latest news about PythonCyc, please consult
    http://bioinformatics.ai.sri.com/ptools/pythoncyc.html

    Author
    ------ 

    Mario Latendresse, [email protected]

    License
    -------

    See file LICENSE.

    Support
    -------

    For comments and/or bug reports, send an email to [email protected].

    Acknowledgments
    ---------------

    Thanks to Eli Bogart to have inspired some implementation details of
    PythonCyc via PyCyc, Tomer Altman for the Pathway Tools API
    documentation, and Daniel Weaver for suggesting to implement some
    specific functions and his design, with Kai Chen, of the beautiful PythonCyc logo.

About

Summary

A Python interface to Pathway Tools

Last Updated

Nov 30, 2016 at 16:10

License

LICENSE

Supported Platforms

noarch