| Package Name | Access | Summary | Updated |
|---|---|---|---|
| r-gtools | public | Functions to assist in R programming, including | 2025-03-25 |
| r-twosamplemr | public | Two Sample MR functions and interface to MR Base database. | 2025-03-25 |
| r-meta | public | User-friendly general package providing standard methods for meta-analysis and supporting Schwarzer, Carpenter, and Rücker <DOI:10.1007/978-3-319-21416-0>, "Meta-Analysis with R" (2015): - fixed effect and random effects meta-analysis; - several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble); - statistical tests and trim-and-fill method to evaluate bias in meta-analysis; - import data from 'RevMan 5'; - prediction interval, Hartung-Knapp and Paule-Mandel method for random effects model; - cumulative meta-analysis and leave-one-out meta-analysis; - meta-regression (if R package 'metafor' is installed); - generalised linear mixed models (if R packages 'metafor', 'lme4', 'numDeriv', and 'BiasedUrn' are installed); - produce forest plot summarising several (subgroup) meta-analyses. | 2025-03-25 |
| r-googleauthr | public | Create R functions that interact with OAuth2 Google APIs <https://developers.google.com/apis-explorer/> easily, with auto-refresh and Shiny compatibility. | 2025-03-25 |
| r-cit | public | A likelihood-based hypothesis testing approach is implemented for assessing causal mediation. For example, it could be used to test for mediation of a known causal association between a DNA variant, the 'instrumental variable', and a clinical outcome or phenotype by gene expression or DNA methylation, the potential mediator. Another example would be testing mediation of the effect of a drug on a clinical outcome by the molecular target. The hypothesis test generates a p-value or permutation-based FDR value with confidence intervals to quantify uncertainty in the causal inference. The outcome can be represented by either a continuous or binary variable, the potential mediator is continuous, and the instrumental variable can be continuous or binary and is not limited to a single variable but may be a design matrix representing multiple variables. | 2025-03-25 |
| r-optparse | public | A command line parser inspired by Python's 'optparse' library to be used with Rscript to write "#!" shebang scripts that accept short and long flag/options. | 2025-03-25 |
| bioconductor-rnbeads.mm10 | public | Automatically generated RnBeads annotation package for the assembly mm10. | 2025-03-25 |
| bioconductor-rnbeads.hg38 | public | Automatically generated RnBeads annotation package for the assembly hg38. | 2025-03-25 |
| bioconductor-rnbeads.hg19 | public | Automatically generated RnBeads annotation package for the assembly hg19. | 2025-03-25 |
| bioconductor-rnbeads | public | RnBeads facilitates comprehensive analysis of various types of DNA methylation data at the genome scale. | 2025-03-25 |
