| Package Name | Access | Summary | Updated |
|---|---|---|---|
| deepsea | public | DeepSEA is a deep learning-based algorithmic framework for predicting the chromatin effects of sequence alterations with single nucleotide sensitivity. DeepSEA can accurately predict the epigenetic state of a sequence, including transcription factors binding, DNase I sensitivities and histone marks in multiple cell types, and further utilize this capability to predict the chromatin effects of sequence variants and prioritize regulatory variants. | 2025-03-25 |
| r-wavelets | public | This package contains functions for computing and plotting discrete wavelet transforms (DWT) and maximal overlap discrete wavelet transforms (MODWT), as well as their inverses. Additionally, it contains functionality for computing and plotting wavelet transform filters that are used in the above decompositions as well as multiresolution analyses. | 2025-03-25 |
| r-lymphclon | public | A clonality score estimator that takes full advantage of the multi-biological-replicate structure of modern sequencing experiments; it specifically takes into account the reality that, typically, the clonal coverage is well below 0.1%. | 2025-03-25 |
| rcs_utils | public | No Summary | 2025-03-25 |
| r-gdsfmt | public | No Summary | 2025-03-25 |
| pycortex | public | No Summary | 2025-03-25 |
| r-coop | public | No Summary | 2025-03-25 |
| pyxnat | public | Xnat in Python | 2025-03-25 |
| danpos | public | No Summary | 2025-03-25 |
| svdetect | public | No Summary | 2025-03-25 |
| desolve | public | No Summary | 2025-03-25 |
| hess | public | No Summary | 2025-03-25 |
| cellprofiler | public | An open-source application for measuring phenotypes | 2025-03-25 |
| python-bioformats | public | Read and write life sciences file formats | 2025-03-25 |
| prokaryote | public | UNKNOWN | 2025-03-25 |
| seer | public | No Summary | 2025-03-25 |
| boost-cpp | public | Free peer-reviewed portable C++ source libraries. | 2025-03-25 |
| gzstream | public | No Summary | 2025-03-25 |
| parcels | public | No Summary | 2025-03-25 |
| abyss | public | No Summary | 2025-03-25 |
| gmcloser | public | No Summary | 2025-03-25 |
| proovread | public | No Summary | 2025-03-25 |
| quip | public | No Summary | 2025-03-25 |
| atomeyelib | public | No Summary | 2025-03-25 |
| pyipopt | public | No Summary | 2025-03-25 |
