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crystal
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public |
The Crystal Programming Language
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2026-02-04 |
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gurobi-matlab
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public |
MATLAB files for Gurobi optimizer.
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2026-02-04 |
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dorado-gpu
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public |
Dorado is a high-performance, easy-to-use, open source basecaller for Oxford Nanopore reads.
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2026-02-04 |
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mrtrix3tissue
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public |
MRtrix3Tissue adds capabilities for 3-Tissue CSD modelling and analysis to a complete version of MRtrix3.
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2026-02-04 |
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cnvcaller
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public |
CNVcaller is designed to detect copy number variation using sequencing data from populations.
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2026-02-04 |
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compass-cplex
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public |
In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes.
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2026-02-04 |
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bioemu
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public |
Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning.
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2026-02-04 |
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toga
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public |
TOGA is a new method that integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
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2026-02-04 |
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deepmd-kit
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public |
A deep learning package for many-body potential energy representation and molecular dynamics
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2026-01-08 |
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ankh
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public |
Optimized Protein Language Model
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2026-01-07 |
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r-candihap
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public |
CandiHap is a user-friendly local software, that can fast preselect candidate causal SNPs from Sanger or next-generation sequencing data, and report results in table and exquisite vector-graphs within a minute.
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2025-12-17 |
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chrombpnet
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public |
Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet).
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2025-12-09 |
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modisco
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public |
Transcription Factor MOtif Discovery from Importance SCOres.
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2025-12-08 |
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modisco-lite
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public |
Transcription Factor MOtif Discovery from Importance SCOres - lite.
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2025-12-03 |
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memelite
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public |
Biological sequence analysis for the modern age.
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2025-12-03 |
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starfile
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public |
STAR file I/O in Python
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2025-12-02 |
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promptlib
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public |
Prompt library
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2025-11-21 |
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django-migration-linter
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public |
Detect backward incompatible migrations for your django project.
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2025-10-07 |
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pyboxen
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public |
Beautiful, customizable boxes in your terminal using Python.
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2025-10-07 |
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metacompass
|
public |
MetaCompass: Reference-guided Assembly of Metagenomes.
|
2025-09-11 |
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r-epianeufinder
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public |
R package to detect breakpoints and assign somies to scATAC-seq data.
|
2025-09-04 |
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r-atacnv
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public |
This is the R package implementation for AtaCNA, a CNA detection algorithm for scATAC-seq datasets.
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2025-09-04 |
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r-simatac
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public |
simATAC is a framework provided as an R package that generates a single-cell Assay for Transposase-Accessible Chromatin sequencing (scATAC-seq) count matrix, highly resembling real scATAC-seq datasets in library size, sparsity, and averaged chromatin accessibility signals.
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2025-09-03 |
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isonclust3
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public |
De novo clustering of long transcript reads into genes.
|
2025-07-07 |
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npinv
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public |
an accurate tool for detecting and genotyping inversion using multiple alignment long reads
|
2025-06-12 |
