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netpbm
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public |
Netpbm is a toolkit for manipulation of graphic images, including conversion of images between a variety of different formats.
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2023-06-16 |
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wgetter
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public |
Another command line download utility written in python
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2023-06-16 |
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htstream
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public |
A toolset for high throughput sequence analysis using a streaming approach facilitated by Linux pipes.
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2023-06-16 |
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bioconductor-pharmacogx
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public |
Contains a set of functions to perform large-scale analysis of pharmacogenomic data.
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2023-06-16 |
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r-magicaxis
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public |
Functions to make useful (and pretty) plots for scientific plotting. Additional plotting features are added for base plotting, with particular emphasis on making attractive log axis plots.
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2023-06-16 |
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r-celestial
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public |
Contains a number of common astronomy conversion routines, particularly the HMS and degrees schemes, which can be fiddly to convert between on mass due to the textural nature of the former. It allows users to coordinate match datasets quickly. It also contains functions for various cosmological calculations.
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2023-06-16 |
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pydp
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public |
PyDP is library for implementing Dirichlet Process mixture models (DPMM).
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2023-06-16 |
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md-cogent
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public |
Cogent is a tool for reconstructing the coding genome using high-quality full-length transcriptome sequences.
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2023-06-16 |
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smrtlink-tools
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public |
PacBio's open-source SMRT Analysis software suite is designed for use with Single Molecule, Real-Time (SMRT) Sequencing data.
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2023-06-16 |
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pyclone
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public |
PyClone is statistical model and software tool designed to infer the prevalence of point mutations in heterogeneous cancer samples.
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2023-06-16 |
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szip
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public |
Szip is an implementation of the extended-Rice lossless compression algorithm.
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2023-06-16 |
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htseq
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public |
A framework to process and analyze data from high-throughput sequencing (HTS) assays
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2023-06-16 |
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cutadapt
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public |
trim adapters from high-throughput sequencing reads
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2023-06-16 |
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aspera-cli
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public |
IBM Aspera Command-Line Interface (the Aspera CLI) is a collection of Aspera tools for performing high-speed, secure data transfers from the command line.
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2023-06-16 |
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apkid
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public |
Android Application Identifier for Packers, Protectors, Obfuscators and Oddities - PEiD for Android.
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2023-06-16 |
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vt-yara-python
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public |
The Python interface for YARA.
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2023-06-16 |
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vt-yara-python-apkid
|
public |
Modified Python interface for YARA for APKiD.
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2023-06-16 |
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vt-yara
|
public |
YARA is a tool aimed at (but not limited to) helping malware researchers to identify and classify malware samples.
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2023-06-16 |
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tensorboard
|
public |
TensorBoard lets you watch Tensors Flow
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2023-06-16 |
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tensorflow-gpu
|
public |
Metapackage for selecting a TensorFlow variant.
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2023-06-16 |
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cuda-driver
|
public |
NVIDIA linux driver
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2023-06-16 |
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pomoxis
|
public |
Fast, concurrent and real-time analysis components from Oxford Nanopore Research
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2023-06-16 |
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scrappie
|
public |
Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group
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2023-06-16 |
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argp-standalone
|
public |
Standalone version of arguments parsing functions from GLIBC.
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2023-06-16 |
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fast5-research
|
public |
ONT Research fast5 read/write package
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2023-06-16 |
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miniasm
|
public |
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
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2023-06-16 |
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aiozmq
|
public |
ZeroMQ integration with asyncio.
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2023-06-16 |
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jvarkit-msa2vcf
|
public |
Getting a VCF file from a CLUSTAW or a FASTA alignment.
|
2023-06-16 |
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phylosnp
|
public |
PhyloSNP: An automated generator of phylogenetic trees from SNP data.
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2023-06-16 |
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tensorflow-tensorboard
|
public |
TensorBoard lets you watch Tensors Flow
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2023-06-16 |
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idba
|
public |
IDBA is a practical iterative De Bruijn Graph De Novo Assembler for sequence assembly in bioinformatics.
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2023-06-16 |
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ksnp
|
public |
kSNP identifies the pan-genome SNPs in a set of genome sequences, and estimates phylogenetic trees based upon those SNPs.
|
2023-06-16 |
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mbuffer
|
public |
mbuffer is a tool for buffering data streams with a large set of unique features
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2023-06-16 |
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cabal-install
|
public |
The cabal-install package provides the cabal command-line tool which simplifies the process of managing Haskell software by automating the fetching, configuration, compilation and installation of Haskell libraries and programs.
|
2023-06-16 |
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quasr
|
public |
QUASR is lightweight pipeline for processing and analysis of high-throughput sequencing data.
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2023-06-16 |
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stack
|
public |
Stack is a cross-platform program for developing Haskell projects.
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2023-06-16 |
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srtools
|
public |
srtools is the toolkit used by members of the Carrington lab for processing and analyzing small RNA sequencing data.
|
2023-06-16 |
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freesurfer
|
public |
An open source software suite for processing and analyzing (human) brain MRI images.
|
2023-06-16 |
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gnuplot
|
public |
Gnuplot, plotting from command line
|
2023-06-16 |
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hiddendomains
|
public |
hiddenDomains is a suite of programs used to identify significant enrichment of ChIP-seq reads that span large domains.
|
2023-06-16 |
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dm-sonnet
|
public |
Sonnet is a library built on top of TensorFlow for building complex neural networks.
|
2023-06-16 |
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tensorflow-fma
|
public |
Computation using data flow graphs for scalable machine learning.
|
2023-06-16 |
|
tensorflow
|
public |
TensorFlow is a machine learning library.
|
2023-06-16 |
|
magic
|
public |
MAGIC: A diffusion-based imputation method reveals gene-gene interactions in single-cell RNA-sequencing data
|
2023-06-16 |
|
age
|
public |
a tools that implements an algorithm for optimal alignment of sequences with structural variants (SVs)
|
2023-06-16 |
|
lftp
|
public |
LFTP is a sophisticated file transfer program supporting a number of network protocols (ftp, http, sftp, fish, torrent).
|
2023-06-16 |
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jvarkit-sam2tsv
|
public |
Prints the SAM alignments as a TAB delimited file.
|
2023-06-16 |
|
plinkseq
|
public |
PLINK/SEQ is an open-source C/C++ library for working with human genetic variation data.
|
2023-06-16 |
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r-regresshaplo
|
public |
This package reconstructs haplotypes from a BAM file using a penalized regression approach.
|
2023-06-16 |
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globus-cli
|
public |
Globus CLI
|
2023-06-16 |
