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HCC / packages

Package Name Access Summary Updated
lftp public LFTP is a sophisticated file transfer program supporting a number of network protocols (ftp, http, sftp, fish, torrent). 2025-03-25
age public a tools that implements an algorithm for optimal alignment of sequences with structural variants (SVs) 2025-03-25
jvarkit-sam2tsv public Prints the SAM alignments as a TAB delimited file. 2025-03-25
plinkseq public PLINK/SEQ is an open-source C/C++ library for working with human genetic variation data. 2025-03-25
beta public Binding and Expression Target Analysis (BETA) is a software package that integrates ChIP-seq of transcription factors or chromatin regulators with differential gene expression data to infer direct target genes. 2025-03-25
r-regresshaplo public This package reconstructs haplotypes from a BAM file using a penalized regression approach. 2025-03-25
globus-cli public Globus CLI 2025-03-25
globus-sdk public Globus SDK for Python 2025-03-25
abayesqr public aBayesQR is a viral quasispecies reconstruction algorithm that employs a maximum-likelihood framework to infer individual sequences in a mixture from high-throughput sequencing data. 2025-03-25
chipathlon-client public No Summary 2025-03-25
svmerge public No Summary 2025-03-25
cnd public No Summary 2025-03-25
chipathlon public No Summary 2025-03-25
phantompeakqualtools public No Summary 2025-03-25
pymeanshift public No Summary 2025-03-25
r-depmixs4 public No Summary 2025-03-25
bosco public No Summary 2025-03-25
mxnet public No Summary 2025-03-25
python-mxnet public No Summary 2025-03-25
r-mxnet public No Summary 2025-03-25
r-viridis public No Summary 2025-03-25
r-visnetwork public No Summary 2025-03-25
r-viridislite public No Summary 2025-03-25
hiddendomains public hiddenDomains is a suite of programs used to identify significant enrichment of ChIP-seq reads that span large domains. 2025-03-25
pegasus-wms public Pegasus WMS is a configurable system for mapping and executing scientific workflows over a wide range of computational infrastructures including laptops, campus clusters, supercomputers, grids, and commercial and academic clouds. 2025-03-25

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