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phanotate
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public |
PHANOTATE is a tool to annotate phage genomes.
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2025-03-25 |
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fastpath
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public |
Fastpath is a fast and lightweight tool for finding the shortest path in a weighted graph.
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2025-03-25 |
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igs-portal-client
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public |
Python-based client for downloading data made available through portals powered by the GDC-based portal system.
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2025-03-25 |
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scipio
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public |
Scipio locates the regions coding for a query protein sequence in a DNA target sequence.
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2025-03-25 |
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basespace-cli
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public |
Toolkit to perform regulatory genomics data analysis
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2025-03-25 |
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staphb-toolkit
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public |
The StaPH-B ToolKit is a Python library of commonly used bioinformatics tools that help to inform public health action. The StaPH-B ToolKit utilizes the StaPH-B Docker Images to enable easy access of open-source software without the need of local installation and/or dependency maintenance.
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2025-03-25 |
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oma
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public |
OMA standalone is a standalone package that can infer orthologs using the OMA algorithm on custom genomes.
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2025-03-25 |
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gethogs
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public |
GETHOGs is a library to infer hierarchical orthologous groups from pairwise evolutionary relationship and its related reference species tree.
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2025-03-25 |
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duo-client
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public |
Reference client for Duo Security APIs
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2025-03-25 |
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libgdiplus
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public |
Libgdiplus is the Mono library that provides a GDI+-compatible API on non-Windows operating systems. Our implementation uses Cairo to do most of the heavy lifting.
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2025-03-25 |
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mumax3
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public |
GPU-accelerated micromagnetic simulator
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2025-03-25 |
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feh
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public |
feh is an X11 image viewer aimed mostly at console users.
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2025-03-25 |
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imlib2
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public |
Imlib 2 is the successor to Imlib. It is NOT a newer version - it is a completely new library.
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2025-03-25 |
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sss-test
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public |
Selection on the Secondary Structure-test: a test that detects positive and negative selection from a set of orthologs, either small or long ncRNAs.
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2025-03-25 |
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perl-fast
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public |
FAST Analysis of Sequences Toolbox
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2025-03-25 |
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perl-sort-key
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public |
The fastest way to sort anything in Perl
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2025-03-25 |
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perl-sort-mergesort
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public |
Merge sorted streams to create a new stream
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2025-03-25 |
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nofold
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public |
NoFold is an approach for characterizing and clustering RNA secondary structures without computational folding or alignment.
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2025-03-25 |
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locarna
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public |
LocARNA is a collection of alignment tools for the structural analysis of RNA.
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2025-03-25 |
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phono3py
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public |
A simulation package of phonon-phonon interaction related properties
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2025-03-25 |
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circleator
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public |
Flexible circular visualization of genome-associated data with BioPerl and SVG.
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2025-03-25 |
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apache-batik
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public |
Batik is a Java-based toolkit for applications or applets that want to use images in the Scalable Vector Graphics (SVG) format for various purposes, such as display, generation or manipulation.
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2025-03-25 |
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gramdist
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public |
GramDist is a utility for generating dissimilarity matrices using the relative complexity measure, a computationally efficient and alignment free evolutionary distance metric.
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2025-03-25 |
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gramcluster
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public |
GramCluster is a fast and accurate progressive clustering algorithm that relies on a grammar-based sequence distance and is particularly useful in clustering large datasets.
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2025-03-25 |
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gramalign
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public |
GramAlign is a time-efficient progressive Multiple Sequence Alignment (MSA) algorithm.
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2025-03-25 |
