| Package Name | Access | Summary | Updated |
|---|---|---|---|
| fastq-screen | public | FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect | 2025-03-25 |
| sjaracne | public | SJARACNe is a scalable solution of ARACNe that dramatically improves the computational performance. | 2025-03-25 |
| cite-seq-count | public | CITE-seq-Count is a program that outputs umi and read counts from raq fastq CITE-seq or hashing data. | 2025-03-25 |
| pytest-dependency | public | Manage dependencies of tests | 2025-03-25 |
| r-cepa | public | Centrality-based pathway enrichment | 2025-03-25 |
| vcftoolz | public | Tools for working with Variant Call Format files. | 2025-03-25 |
| imsindel | public | An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis | 2025-03-25 |
| pblat | public | parallelized blat with multi-threads support | 2025-03-25 |
| igv | public | Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations | 2025-03-25 |
| academic-keyword-occurrence | public | This script extracts the historic word occurrence of a search term in academic papers (from Google Scholar). It allows for spotting trends in research and analyzing the relevance of a topic over time. | 2025-03-25 |
| jvarkit-bam2svg | public | BAM to Scalar Vector Graphics (SVG) | 2025-03-25 |
| jvarkit-bam2wig | public | Bam to fixedStep Wiggle converter, or BED GRAPH. | 2025-03-25 |
| plantuml | public | PlantUML is a component that allows to quickly write UML and non-UML diagrams. | 2025-03-25 |
| danpos | public | A toolkit for Dynamic Analysis of Nucleosome and Protein Occupancy by Sequencing, version 2. | 2025-03-25 |
| r-greatr | public | Gene Ontology enrichment analysis visualization for multiple samples using GREAT API. | 2025-03-25 |
| sample | public | A memory-efficient alternative to shuf for sampling in huge files. | 2025-03-25 |
| hmmlearn | public | Hidden Markov Models in Python, with scikit-learn like API | 2025-03-25 |
| r-pasha | public | Preprocessing of Aligned Sequences from HTS Analyses. | 2025-03-25 |
| pygtftk | public | The gtftk suite providing facilities to manipulate genomic annotations in gtf format. | 2025-03-25 |
| bioconductor-deseq2 | public | No Summary | 2025-03-25 |
| r-locfit | public | No Summary | 2025-03-25 |
| r-catools | public | No Summary | 2025-03-25 |
| bioconductor-genefilter | public | No Summary | 2025-03-25 |
| r-ggrepel | public | No Summary | 2025-03-25 |
