guillaumecharbonnier
by guillaumecharbonnier
Most Popular
Downloads
Usage Instructions
To install packages from this channel, use the channel temporarily with conda or add it to your .condarc file for configured ongoing access. Learn more
- Temporary
- Configured
Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| academic-keyword-occurrence | master | This script extracts the historic word occurrence of a search term in academic papers (from Google Scholar). It allows for spotting trends in research and analyzing the relevance of a topic over time. | Mar 25, 2025 | MIT |
| bioconductor-deseq2 | 1.12.4 | — | Mar 25, 2025 | — |
| bioconductor-genefilter | 1.56.0 | — | Mar 25, 2025 | — |
| cite-seq-count | 1.4.3 | CITE-seq-Count is a program that outputs umi and read counts from raq fastq CITE-seq or hashing data. | Mar 25, 2025 | MIT |
| danpos | 2.2.2 | A toolkit for Dynamic Analysis of Nucleosome and Protein Occupancy by Sequencing, version 2. | Mar 25, 2025 | — |
| fastq-screen | 0.15.2 | FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect | Mar 25, 2025 | GPLv3 |
| hmmlearn | 0.1.1 | Hidden Markov Models in Python, with scikit-learn like API | Mar 25, 2025 | BSD |
| igv | 2.5.2 | Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations | Mar 25, 2025 | MIT |
| imsindel | 1.0.1 | An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis | Mar 25, 2025 | MIT |
| jvarkit-bam2svg | 201904251722 | BAM to Scalar Vector Graphics (SVG) | Mar 25, 2025 | MIT |
| jvarkit-bam2wig | 201904251722 | Bam to fixedStep Wiggle converter, or BED GRAPH. | Mar 25, 2025 | MIT |
| pblat | 2.1 | parallelized blat with multi-threads support | Mar 25, 2025 | Free for academic, nonprofit and personal use |
| plantuml | 1.2019 | PlantUML is a component that allows to quickly write UML and non-UML diagrams. | Mar 25, 2025 | — |
| pygtftk | 1.2.7 | The gtftk suite providing facilities to manipulate genomic annotations in gtf format. | Mar 25, 2025 | MIT |
| pytest-dependency | 0.4.0 | Manage dependencies of tests | Mar 25, 2025 | Apache-2.0 |
| r-catools | 1.17.1 | — | Mar 25, 2025 | — |
| r-cepa | 0.7.0 | Centrality-based pathway enrichment | Mar 25, 2025 | GPL-2.0 |
| r-ggrepel | 0.6.5 | — | Mar 25, 2025 | — |
| r-greatr | 0.1.5 | Gene Ontology enrichment analysis visualization for multiple samples using GREAT API. | Mar 25, 2025 | MIT |
| r-locfit | 1.5_9.1 | — | Mar 25, 2025 | — |
| r-pasha | 0.99.21 | Preprocessing of Aligned Sequences from HTS Analyses. | Mar 25, 2025 | GPL-3 |
| sample | 1.0.3 | A memory-efficient alternative to shuf for sampling in huge files. | Mar 25, 2025 | MIT |
| sjaracne | 0.2.0 | SJARACNe is a scalable solution of ARACNe that dramatically improves the computational performance. | Mar 25, 2025 | LICENCE.md |
| vcftoolz | 1.2.0 | Tools for working with Variant Call Format files. | Mar 25, 2025 | Free (See LICENCE) |