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grst / packages

Package Name Access Summary Updated
scirpy public A Scanpy extension for analyzing single-cell T-cell receptor sequencing data. 2025-03-25
rectangle-packer public Pack a set of rectangles into an enclosing rectangle with minimum area 2025-03-25
bwa-index public create indexes for BWA from a fasta file 2025-03-25
gatk-dict public create a dictionary file from a fasta file 2025-03-25
trim_galore public Trim FastQ files using Trim Galore! 2025-03-25
fastqc public Run FastQC on sequenced reads 2025-03-25
nf-bwa-index public create indexes for BWA from a fasta file 2025-03-25
nextflow-fastqc public No Summary 2025-03-25
r-immunarch public No Summary 2025-03-25
aria2 public aria2 is a lightweight multi-protocol & multi-source, cross platform download utility operated in command-line. It supports HTTP/HTTPS, FTP, SFTP, BitTorrent and Metalink. 2025-03-25
reportsrender public Consistently render Rmarkdown documents and jupyter notebooks to HTML 2025-03-25
scrublet public No Summary 2025-03-25
r-harmony public No Summary 2025-03-25
tree public Tree is a recursive directory listing command that produces a depth indented listing of files, which is colorized ala dircolors if the LS_COLORS environment variable is set and output is to tty. 2025-03-25
scanpy public Single-Cell Analysis in Python. Scales to >1M cells. 2025-03-25
doubletdetection public Doublet detection in single-cell RNA-seq data. 2025-03-25
phenograph public Subpopulation detection in high-dimensional single-cell data 2025-03-25
r-immunedeconv public collection of methods for immune cell deconvolution of bulk RNA-seq samples. 2025-03-25
multicore-tsne public Parallel t-SNE implementation with Python and Torch wrappers. 2025-03-25
jupytext public Jupyter notebooks as Markdown documents, Julia, Python or R scripts 2025-03-25
r-conflicted public R's default conflict management system gives the most recently loaded package precedence. This can make it hard to detect conflicts, particularly when they arise because a package update creates ambiguity that did not previously exist. 'conflicted' takes a different approach, making every conflict an error and forcing you to choose which function to use. 2025-03-25
r-rmdformats public HTML formats and templates for 'rmarkdown' documents, with some extra features such as automatic table of contents, lightboxed figures, dynamic crosstab helper. 2025-03-25
r-labelled public Work with labelled data imported from 'SPSS' or 'Stata' with 'haven' or 'foreign'. 2025-03-25
r-questionr public Set of functions to make the processing and analysis of surveys easier : interactive shiny apps and addins for data recoding, contingency tables, dataset metadata handling, and several convenience functions. 2025-03-25
r-limsolve public Functions that (1) find the minimum/maximum of a linear or quadratic function: min or max (f(x)), where f(x) = ||Ax-b||^2 or f(x) = sum(a_i*x_i) subject to equality constraints Ex=f and/or inequality constraints Gx>=h, (2) sample an underdetermined- or overdetermined system Ex=f subject to Gx>=h, and if applicable Ax~=b, (3) solve a linear system Ax=B for the unknown x. It includes banded and tridiagonal linear systems. The package calls Fortran functions from 'LINPACK'. 2025-03-25

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