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scirpy
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public |
A Scanpy extension for analyzing single-cell T-cell receptor sequencing data.
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2025-03-25 |
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rectangle-packer
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public |
Pack a set of rectangles into an enclosing rectangle with minimum area
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2025-03-25 |
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bwa-index
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public |
create indexes for BWA from a fasta file
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2025-03-25 |
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gatk-dict
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public |
create a dictionary file from a fasta file
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2025-03-25 |
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trim_galore
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public |
Trim FastQ files using Trim Galore!
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2025-03-25 |
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fastqc
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public |
Run FastQC on sequenced reads
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2025-03-25 |
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nf-bwa-index
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public |
create indexes for BWA from a fasta file
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2025-03-25 |
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nextflow-fastqc
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public |
No Summary
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2025-03-25 |
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r-immunarch
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public |
No Summary
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2025-03-25 |
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aria2
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public |
aria2 is a lightweight multi-protocol & multi-source, cross platform download utility operated in command-line. It supports HTTP/HTTPS, FTP, SFTP, BitTorrent and Metalink.
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2025-03-25 |
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reportsrender
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public |
Consistently render Rmarkdown documents and jupyter notebooks to HTML
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2025-03-25 |
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scrublet
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public |
No Summary
|
2025-03-25 |
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r-harmony
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public |
No Summary
|
2025-03-25 |
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tree
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public |
Tree is a recursive directory listing command that produces a depth indented listing of files, which is colorized ala dircolors if the LS_COLORS environment variable is set and output is to tty.
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2025-03-25 |
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scanpy
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public |
Single-Cell Analysis in Python. Scales to >1M cells.
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2025-03-25 |
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doubletdetection
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public |
Doublet detection in single-cell RNA-seq data.
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2025-03-25 |
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phenograph
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public |
Subpopulation detection in high-dimensional single-cell data
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2025-03-25 |
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r-immunedeconv
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public |
collection of methods for immune cell deconvolution of bulk RNA-seq samples.
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2025-03-25 |
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multicore-tsne
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public |
Parallel t-SNE implementation with Python and Torch wrappers.
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2025-03-25 |
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jupytext
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public |
Jupyter notebooks as Markdown documents, Julia, Python or R scripts
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2025-03-25 |
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r-conflicted
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public |
R's default conflict management system gives the most recently loaded package precedence. This can make it hard to detect conflicts, particularly when they arise because a package update creates ambiguity that did not previously exist. 'conflicted' takes a different approach, making every conflict an error and forcing you to choose which function to use.
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2025-03-25 |
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r-rmdformats
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public |
HTML formats and templates for 'rmarkdown' documents, with some extra features such as automatic table of contents, lightboxed figures, dynamic crosstab helper.
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2025-03-25 |
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r-labelled
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public |
Work with labelled data imported from 'SPSS' or 'Stata' with 'haven' or 'foreign'.
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2025-03-25 |
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r-questionr
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public |
Set of functions to make the processing and analysis of surveys easier : interactive shiny apps and addins for data recoding, contingency tables, dataset metadata handling, and several convenience functions.
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2025-03-25 |
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r-limsolve
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public |
Functions that (1) find the minimum/maximum of a linear or quadratic function: min or max (f(x)), where f(x) = ||Ax-b||^2 or f(x) = sum(a_i*x_i) subject to equality constraints Ex=f and/or inequality constraints Gx>=h, (2) sample an underdetermined- or overdetermined system Ex=f subject to Gx>=h, and if applicable Ax~=b, (3) solve a linear system Ax=B for the unknown x. It includes banded and tridiagonal linear systems. The package calls Fortran functions from 'LINPACK'.
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2025-03-25 |
