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genomewalker / packages

Package Name Access Summary Updated
track-duplicates public A simple tool to extract damaged reads from BAM files 2025-03-25
get-reads-taxonomy public A simple tool to extract damaged reads from BAM files 2025-03-25
get-read-percid public A simple tool to extract references from BAM files and get read statistics 2025-03-25
get-ancient-vf public A simple tool to filter BLASTx m8 files using the FAMLI algorithm 2025-03-25
get-biomes public A simple tool to get biomes related data from MGnify and ENA 2025-03-25
dmg-reads public A simple tool to extract damaged reads from BAM files 2025-03-25
collapse-gtdb-tree public A simple tool to collapse a GTDB to a certain rank. 2025-03-25
bam-filter public A simple tool to filter references from a BAM file using different filter types 2025-03-25
refine-contigs public A simple tool to identify and clean misassemblies for ancient metagenomics 2025-03-25
simple-slurm public A simple Python wrapper for Slurm with flexibility in mind. 2025-03-25

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