|
r-sdmpredictors
|
public |
Terrestrial and marine predictors for species distribution modelling from multiple sources, including WorldClim <https://www.worldclim.org/>,, ENVIREM <https://envirem.github.io/>, Bio-ORACLE <https://bio-oracle.org/> and MARSPEC <http://www.marspec.org/>.
|
2025-03-25 |
|
r-ldheatmap
|
public |
Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between single nucleotide polymorphisms (SNPs). Users may optionally include the physical locations or genetic map distances of each SNP on the plot. The methods are described in Shin et al. (2006) <doi:10.18637/jss.v016.c03>. Users should note that the imported package 'snpStats' and the suggested packages 'rtracklayer', 'GenomicRanges', 'GenomInfoDb' and 'IRanges' are all BioConductor packages <https://bioconductor.org>.
|
2025-03-25 |
|
r-terra
|
public |
Methods for spatial data analysis with raster and vector data. Raster methods allow for low-level data manipulation as well as high-level global, local, zonal, and focal computation. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction, including with satellite remote sensing data. Processing of very large files is supported. See the manual and tutorials on <https://rspatial.org/terra/> to get started. 'terra' is very similar to the 'raster' package; but 'terra' can do more, is simpler to use, and it is faster.
|
2025-03-25 |
|
gdk-mvapich2
|
public |
MPI implementation for GenomeDK
|
2025-03-25 |
|
somalier
|
public |
No Summary
|
2025-03-25 |
|
gdk-mpich-mpifort
|
public |
A high performance widely portable implementation of the MPI standard.
|
2025-03-25 |
|
gdk-mpich-mpicxx
|
public |
A high performance widely portable implementation of the MPI standard.
|
2025-03-25 |
|
gdk-mpich-mpicc
|
public |
A high performance widely portable implementation of the MPI standard.
|
2025-03-25 |
|
gdk-mpich
|
public |
A high performance widely portable implementation of the MPI standard.
|
2025-03-25 |
|
r-genomicsem
|
public |
Later
|
2025-03-25 |
|
py-mixer
|
public |
No Summary
|
2025-03-25 |
|
msmc2
|
public |
This program implements MSMC2, a method to infer population size history and population separation history from whole genome sequencing data.
|
2025-03-25 |
|
k-mers-gwas
|
public |
No Summary
|
2025-03-25 |
|
maftools
|
public |
mafTools is a collection of tools that operate on Multiple Alignment Format (maf) files.
|
2025-03-25 |
|
pinchesandcacti
|
public |
This is a library for creating pinch graphs (generalised overlap graphs) and cactus graphs.
|
2025-03-25 |
|
asset-dfguan
|
public |
Assembly evaluation tool
|
2025-03-25 |
|
gromacs
|
public |
GROMACS is a versatile package to perform molecular dynamics.
|
2025-03-25 |
|
quicktest
|
public |
Methods for testing association between uncertain genotypes and quantitative traits
|
2025-03-25 |
|
ohana
|
public |
Ohana is a suite of software for analyzing population structure and admixture history using unsupervised learning methods.
|
2025-03-25 |
|
kplogo
|
public |
k-mer probability logo (kpLogo) is a computational tool for sensitive discovery and visualization of position-specific ultra-short sequence motifs from a set of sequences with precisely defined positions.
|
2025-03-25 |
|
greedy-diffeomorphic
|
public |
Very fast greedy diffeomorphic registration code.
|
2025-03-25 |
|
r-scenic
|
public |
SCENIC (Single-Cell rEgulatory Network Inference and Clustering) is a computational method to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
|
2025-03-25 |
|
combined-pvalues-py37
|
public |
A library to combine, analyze, group and correct p-values in BED files.
Unique tools involve correction for spatial autocorrelation.
This is useful for ChIP-Seq probes and Tiling arrays, or any data with spatial correlation.
|
2025-03-25 |
|
ucsc-nettoaxt-ramstein
|
public |
Convert net (and chain) to axt.
|
2025-03-25 |
|
bayescan
|
public |
Phylogenetics - Randomized Axelerated Maximum Likelihood.
|
2025-03-25 |
