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genomedk/r-ldheatmap

r-ldheatmap

Community

Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between single nucleotide polymorphisms (SNPs). Users may optionally include the physical locations or genetic map distances of each SNP on the plot. The methods are described in Shin et al. (2006) <doi:10.18637/jss.v016.c03>. Users should note that the imported package 'snpStats' and the suggested packages 'rtracklayer', 'GenomicRanges', 'GenomInfoDb' and 'IRanges' are all BioConductor packages <https://bioconductor.org>.

Installation

To install this package, run one of the following:

Conda
$conda install genomedk::r-ldheatmap

Usage Tracking

1.0_6
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Downloads (Last 6 months): 0

About

Summary

Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between single nucleotide polymorphisms (SNPs). Users may optionally include the physical locations or genetic map distances of each SNP on the plot. The methods are described in Shin et al. (2006) <doi:10.18637/jss.v016.c03>. Users should note that the imported package 'snpStats' and the suggested packages 'rtracklayer', 'GenomicRanges', 'GenomInfoDb' and 'IRanges' are all BioConductor packages <https://bioconductor.org>.

Last Updated

Dec 8, 2022 at 10:05

License

GPL-3

Total Downloads

246

Supported Platforms

linux-64

Home

https://sfustatgen.github.io/LDheatmap/