genomedk
by GenomeDK (Organization)
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To install packages from this channel, use the channel temporarily with conda or add it to your .condarc file for configured ongoing access. Learn more
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| abra2 | 2.20 | ABRA2 is an updated implementation of ABRA featuring | Mar 25, 2025 | MIT |
| argweaver | 20200306 | Sampling and manipulating genome-wide ancestral recombination graphs (ARGs) | Mar 25, 2025 | MIT |
| asset-dfguan | 1.0.3 | Assembly evaluation tool | Mar 25, 2025 | MIT |
| bayescan | 2.1 | Phylogenetics - Randomized Axelerated Maximum Likelihood. | Mar 25, 2025 | GPL |
| bolt-lmm | 2.4.1 | Efficient large cohorts genome-wide Bayesian mixed-model association testing | Mar 25, 2025 | GPL-3+ |
| bolt-lmm-amd | 2.4.1 | Efficient large cohorts genome-wide Bayesian mixed-model association testing | Mar 25, 2025 | GPL-3+ |
| cget | 0.1.8 | Cmake package retrieval | Mar 25, 2025 | boost |
| combined-pvalues-py37 | 0.50.6 | A library to combine, analyze, group and correct p-values in BED files. Unique tools involve correction for spatial autocorrelation. This is useful for ChIP-Seq probes and Tiling arrays, or any data with spatial correlation. | Mar 25, 2025 | MIT |
| deepvariant | 0.7.2 | DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data | Mar 25, 2025 | MIT |
| dogfinder | 231013 | DoGFinder software is a package that identifies DoGs and quantifies their expression levels, from RNA-seq data. | Mar 25, 2025 | — |
| epacts | 3.4.2 | — | Mar 25, 2025 | — |
| exabayes | 1.5.1 | ExaBayes is a software package for Bayesian tree inference. It is particularly suitable for large-scale analyses on computer clusters. | Mar 25, 2025 | GPLv3 |
| fdstools | 1.2.0 | Forensic DNA Sequencing Tools | Mar 25, 2025 | GNU General Public v3 or later (GPLv3+) |
| finestructure | 4.0.1 | — | Mar 25, 2025 | OTHER |
| gcc-7 | 7.2.0 | The GNU Compiler Collection | Mar 25, 2025 | GPL |
| gctb | 2.0001 | — | Mar 25, 2025 | MIT |
| gdk-mpich | 4.0.2 | A high performance widely portable implementation of the MPI standard. | Mar 25, 2025 | LicenseRef-MPICH |
| gdk-mpich-mpicc | 4.0.2 | A high performance widely portable implementation of the MPI standard. | Mar 25, 2025 | LicenseRef-MPICH |
| gdk-mpich-mpicxx | 4.0.2 | A high performance widely portable implementation of the MPI standard. | Mar 25, 2025 | LicenseRef-MPICH |
| gdk-mpich-mpifort | 4.0.2 | A high performance widely portable implementation of the MPI standard. | Mar 25, 2025 | LicenseRef-MPICH |
| gdk-mvapich2 | 2.3.7 | MPI implementation for GenomeDK | Mar 25, 2025 | BSD |
| gdk-ssl-cert | 2019.06.17 | — | Mar 25, 2025 | OTHER |
| gmrm | 2022.06.21 | A Bayesian grouped mixture of regressions model capable of estimating SNP marker effect sizes for multiple outcomes simultaneously | Mar 25, 2025 | MIT |
| grapes-static | 1.1.0 | Rate of Adaptive Protein Evolution Software | Mar 25, 2025 | GPLv3 |
| greedy-diffeomorphic | 1.0.1 | Very fast greedy diffeomorphic registration code. | Mar 25, 2025 | — |