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r-sicegar

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Aims to quantify time intensity data by using sigmoidal and double sigmoidal curves. It fits straight lines, sigmoidal, and double sigmoidal curves on to time vs intensity data. Then all the fits are used to make decision on which model best describes the data. This method was first developed in the context of single-cell viral growth analysis (for details, see Caglar et al. (2018) <doi:10.7717/peerj.4251>), and the package name stands for "SIngle CEll Growth Analysis in R".

Installation

To install this package, run one of the following:

Conda
$conda install genomedk::r-sicegar

Usage Tracking

0.2.4
1 / 8 versions selected
Downloads (Last 6 months): 0

About

Summary

Aims to quantify time intensity data by using sigmoidal and double sigmoidal curves. It fits straight lines, sigmoidal, and double sigmoidal curves on to time vs intensity data. Then all the fits are used to make decision on which model best describes the data. This method was first developed in the context of single-cell viral growth analysis (for details, see Caglar et al. (2018) <doi:10.7717/peerj.4251>), and the package name stands for "SIngle CEll Growth Analysis in R".

Last Updated

Jan 17, 2024 at 13:04

License

GPL-2 | GPL-3

Total Downloads

104

Supported Platforms

linux-64