SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
SqueezeMeta is a fully automatic pipeline for metagenomics/metatranscriptomics, covering all steps of the analysis. SqueezeMeta includes multi-metagenome support allowing the co-assembly of related metagenomes and the retrieval of individual genomes via binning procedures.
To install this package with mamba run:
mamba create -n SqueezeMeta -c conda-forge -c bioconda -c anaconda -c fpusan squeezemeta-dev --no-channel-priority
And activate it with:
conda activate SqueezeMeta
Detailed usage instructions can be found at http://github.com/jtamames/SqueezeMeta
