fpusan / packages / squeezemeta 1.4.0

SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins


conda install

  • noarch  v1.4.0
To install this package with conda run:
conda install -c fpusan squeezemeta


SqueezeMeta is a fully automatic pipeline for metagenomics/metatranscriptomics, covering all steps of the analysis. SqueezeMeta includes multi-metagenome support allowing the co-assembly of related metagenomes and the retrieval of individual genomes via binning procedures.

To install this package with conda run:

conda create -n SqueezeMeta -c conda-forge -c bioconda -c fpusan squeezemeta

And activate it with:

conda activate SqueezeMeta

Detailed usage instructions can be found at http://github.com/jtamames/SqueezeMeta

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