SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
SqueezeMeta is a fully automatic pipeline for metagenomics/metatranscriptomics, covering all steps of the analysis. SqueezeMeta includes multi-metagenome support allowing the co-assembly of related metagenomes and the retrieval of individual genomes via binning procedures.
To install this package with conda run:
conda create -n SqueezeMeta -c conda-forge -c bioconda -c fpusan squeezemeta
And activate it with:
conda activate SqueezeMeta
Detailed usage instructions can be found at http://github.com/jtamames/SqueezeMeta