| Package Name | Access | Summary | Updated |
|---|---|---|---|
| preprocessing | public | Preprocessing pipeline for cleaning metagenomes sequenced on Illumina HiSeq. Steps are: (1) index trimming, low-quality discarding, and removing of short reads; (2) host contaminants removal; (3) splitting and sorting of reads into R1, R2, and UN sets of reads. | 2023-06-16 |
| q2-metaphlan2 | public | MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from metagenomic shotgun sequencing data with species level resolution. From version 2.0 MetaPhlAn is also able to identify specific strains (in the not-so-frequent cases in which the sample contains a previously sequenced strains) and to track strains across samples for all species. | 2023-06-16 |
