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clickclick
|
public |
No Summary
|
2025-03-25 |
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blossomv
|
public |
Python wrapper for the Blossom V algorithm
|
2025-03-25 |
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theta
|
public |
Tumor Heterogeneity Analysis (THetA) is an algorithm that estimates the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data.
|
2025-03-25 |
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bnpy
|
public |
Bayesian nonparametric machine learning for python.
|
2025-03-25 |
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bicseq2-seg
|
public |
No Summary
|
2025-03-25 |
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bicseq2-norm
|
public |
No Summary
|
2025-03-25 |
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r-ada
|
public |
Performs discrete, real, and gentle boost under both exponential and logistic loss on a given data set. The package ada provides a straightforward, well-documented, and broad boosting routine for classification, ideally suited for small to moderate-sized data sets.
|
2025-03-25 |
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samblaster
|
public |
A tool to mark duplicates and extract discordant and split reads from sam files.
|
2025-03-25 |
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delly_utils
|
public |
Structural variant discovery by integrated paired-end and split-read analysis
|
2025-03-25 |
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remixt
|
public |
ReMixT is a tool for joint inference of clone specific segment and breakpoint copy number in whole genome sequencing data
|
2025-03-25 |
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biobambam2
|
public |
Tools for early stage alignment file processing
|
2025-03-25 |
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libmaus2
|
public |
collection of data structures and algorithms
|
2025-03-25 |
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libmaus
|
public |
libmaus is a collection of data structures and algorithms
|
2025-03-25 |
|
boost_lib
|
public |
Library for boost c++
|
2025-03-25 |
|
citup
|
public |
Clonality inference in multiple tumor samples using phylogeny
|
2025-03-25 |
|
shapeit
|
public |
SHAPEIT is a fast and accurate method for estimation of haplotypes (aka phasing) from genotype or sequencing data.
|
2025-03-25 |
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hmmcopy_utils
|
public |
Utilities for HMMCopy
|
2025-03-25 |
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gsl
|
public |
No Summary
|
2025-03-25 |
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clonehd
|
public |
High-definition reconstruction of clonal composition from next-generation sequencing data
|
2025-03-25 |
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bioconductor-titan
|
public |
Corrects GC and mappability biases for readcounts (i.e. coverage) in non-overlapping windows of fixed length for single whole genome samples, yielding a rough estimate of copy number for furthur analysis. Designed for rapid correction of high coverage whole genome tumour and normal samples.
|
2025-03-25 |
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r-argparse
|
public |
A command line parser to be used with Rscript to write "#!" shebang scripts that gracefully accept positional and optional arguments and automatically generate usage.
|
2025-03-25 |
|
r-findpython
|
public |
Package designed to find an acceptable python binary.
|
2025-03-25 |
|
bioconductor-hmmcopy
|
public |
Corrects GC and mappability biases for readcounts (i.e. coverage) in non-overlapping windows of fixed length for single whole genome samples, yielding a rough estimate of copy number for furthur analysis. Designed for rapid correction of high coverage whole genome tumour and normal samples.
|
2025-03-25 |
|
defuse
|
public |
Bioinformatics tool for gene fusion discovery using RNA-Seq data
|
2025-03-25 |
|
biowrappers
|
public |
No Summary
|
2025-03-25 |
