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bioconductor-hmmcopy

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Corrects GC and mappability biases for readcounts (i.e. coverage) in non-overlapping windows of fixed length for single whole genome samples, yielding a rough estimate of copy number for furthur analysis. Designed for rapid correction of high coverage whole genome tumour and normal samples.

Installation

To install this package, run one of the following:

Conda
$conda install dranew::bioconductor-hmmcopy

Usage Tracking

1.12.0
1 / 8 versions selected
Downloads (Last 6 months): 0

About

Summary

Corrects GC and mappability biases for readcounts (i.e. coverage) in non-overlapping windows of fixed length for single whole genome samples, yielding a rough estimate of copy number for furthur analysis. Designed for rapid correction of high coverage whole genome tumour and normal samples.

Last Updated

Apr 4, 2016 at 23:34

Total Downloads

252

Supported Platforms

linux-64
macOS-64