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uncrustify
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public |
Source code beautifier
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2025-03-25 |
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slurm-torque
|
public |
PBS/Torque interface for SLURM
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2025-03-25 |
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afc
|
public |
Calculates allelic Fold Change (aFC) using standard input files for fastQTL
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2025-03-25 |
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shapeit2
|
public |
Fast and accurate method for estimation of haplotypes (aka phasing) from genotype or sequencing data
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2025-03-25 |
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gtex-pipeline-qtl
|
public |
GTEx & TOPMed data production and analysis pipelines - QTL component
|
2025-03-25 |
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dapars2
|
public |
Dynamic analysis of Alternative PolyAdenylation from RNA-seq
|
2025-03-25 |
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gtex-pipeline-rnaseq
|
public |
GTEx & TOPMed data production and analysis pipelines - RNA-seq component
|
2025-03-25 |
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gtex-pipeline-genotype
|
public |
GTEx & TOPMed data production and analysis pipelines - genotype component
|
2025-03-25 |
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gtex-pipeline-gene_model
|
public |
GTEx & TOPMed data production and analysis pipelines - gene model component
|
2025-03-25 |
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cugg
|
public |
Modules for LD computing, liftover and region extraction
|
2025-03-25 |
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nbdev
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public |
Create delightful software with Jupyter Notebooks
|
2025-03-25 |
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fastscript
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public |
A fast way to turn your python function into a script
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2025-03-25 |
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pybgen
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public |
Python module to read BGEN files.
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2025-03-25 |
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python-ldstore
|
public |
A package for reading files created by LDstore
|
2025-03-25 |
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ldstore
|
public |
LDstore is a computationally efficient program for estimating and storing Linkage Disequilibrium (SNP correlations).
|
2025-03-25 |
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apex
|
public |
Toolkit for QTL mapping and meta-analysis.
|
2025-03-25 |
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taywee-args
|
public |
A simple header-only C++ argument parser library.
|
2025-03-25 |
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r-flashpcar
|
public |
Fast Principal Component Analysis of Large-Scale Genome-Wide Data
|
2025-03-25 |
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r-leafcutter
|
public |
Alternative Splicing Quantification, Differential Splicing, Outlier Splicing Detection, and Splicing QTL Mapping
|
2025-03-25 |
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r-tailrank
|
public |
Implements the tail-rank statistic for selecting biomarkers from a microarray data set, an efficient nonparametric test focused on the distributional tails. See <https://gitlab.com/krcoombes/coombeslab/-/blob/master/doc/papers/tolstoy-new.pdf>.
|
2025-03-25 |
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r-gwasrapidd
|
public |
'GWAS' R 'API' Data Download. This package provides easy access to the 'NHGRI'-'EBI' 'GWAS' Catalog data by accessing the 'REST' 'API' <https://www.ebi.ac.uk/gwas/rest/docs/api/>.
|
2025-03-25 |
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r-concatenate
|
public |
Simple functions for joining strings. Construct human-friendly messages whose elements aren't known in advance, like in stop, warning, or message, from clean code.
|
2025-03-25 |
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r-mvf.susie.alpha
|
public |
Multivariate Sum of Single Functions
|
2025-03-25 |
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r-susif.alpha
|
public |
Draft package for "Sum of Single Functions" method.
|
2025-03-25 |
|
r-mvsusier
|
public |
Implements a multivariate generalization of the "Sum of Single Effects" (SuSiE) model for variable selection in multivariate linear regression.
|
2025-03-25 |
