| Package Name | Access | Summary | Updated |
|---|---|---|---|
| gtool | public | GTOOL is a program for transforming sets of genotype data for use with the programs SNPTEST and IMPUTE. | 2025-03-25 |
| vipcca | public | No Summary | 2025-03-25 |
| r-viper | public | The package implements a straightforward, accurate, free-of-tuning, and relatively computationally efficient scRNAseq imputation method. | 2025-03-25 |
| r-metro | public | Multi-ancEstry TRanscriptOme-wide analysis | 2025-03-25 |
| r-mesusie | public | Multi-ancestry Sum of the Single Effects Model | 2025-03-25 |
| r-image | public | MQTL mapping in bisulfite sequencing studies by fitting a binomial mixed model, incorporating allelic-specific methylation pattern. | 2025-03-25 |
| r-idea | public | iDEA is a new method for analyzing single-cell RNAseq data. | 2025-03-25 |
| r-gift | public | GIFT is an R package for efficient statistical inference of conditional TWAS fine-mapping. | 2025-03-25 |
| r-gecko | public | Genetic and Environmental Covariance Estimation by Composite-Likelihood Optimization | 2025-03-25 |
| r-ecco | public | ECCO is implemented as an open source R package for determining the optimal number of PEER factors in eQTL mapping studies. | 2025-03-25 |
| r-coconet | public | Composite likelihood-based Covariance regression Network model for identification of trait-relevant tissues or cell types. | 2025-03-25 |
| mtpgs | public | mtPGS is a statistical method that leverages multiple traits to construct accurate polygenic scores (PGS) for a target trait of interest. | 2025-03-25 |
| macau | public | MACAU is the software implementing the Mixed model Association for Count data via data AUgmentation algorithm. | 2025-03-25 |
| r-sda4d | public | R package SDA4D for performing 4-dimensional sparse Bayesian tensor decomposition | 2025-03-25 |
| duohmm | public | A post-hoc pedigree phasing routine for use with SHAPEIT2 | 2025-03-25 |
| lemma | public | LEMMA (Linear Environment Mixed Model Analysis) aims to uncover GxE interactions between SNPs and a linear combination of multiple environmental variables. | 2025-03-25 |
| qctool | public | Command-line programs that manipulate gwas datasets and other genomic data. | 2025-03-25 |
| phaser | public | phasing and Allele Specific Expression from RNA-seq | 2025-03-25 |
| wasp | public | WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery | 2025-03-25 |
| swing | public | No Summary | 2025-03-25 |
| sushie | public | Software to perform multi-ancestry fine-mapping and estimate prediction weights for molQTL data | 2025-03-25 |
| bgen-reader | public | Bgen file format reader | 2025-03-25 |
| python_circos | public | Circos plots for python | 2025-03-25 |
| ktplotspy | public | Python library for plotting Cellphonedb results. Ported from ktplots R package. | 2025-03-25 |
| geosketch | public | Geometry-preserving random sampling | 2025-03-25 |
