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r-sda4d
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public |
R package SDA4D for performing 4-dimensional sparse Bayesian tensor decomposition
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2025-03-25 |
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duohmm
|
public |
A post-hoc pedigree phasing routine for use with SHAPEIT2
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2025-03-25 |
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lemma
|
public |
LEMMA (Linear Environment Mixed Model Analysis) aims to uncover GxE interactions between SNPs and a linear combination of multiple environmental variables.
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2025-03-25 |
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qctool
|
public |
Command-line programs that manipulate gwas datasets and other genomic data.
|
2025-03-25 |
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phaser
|
public |
phasing and Allele Specific Expression from RNA-seq
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2025-03-25 |
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wasp
|
public |
WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery
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2025-03-25 |
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swing
|
public |
No Summary
|
2025-03-25 |
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sushie
|
public |
Software to perform multi-ancestry fine-mapping and estimate prediction weights for molQTL data
|
2025-03-25 |
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bgen-reader
|
public |
Bgen file format reader
|
2025-03-25 |
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python_circos
|
public |
Circos plots for python
|
2025-03-25 |
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ktplotspy
|
public |
Python library for plotting Cellphonedb results. Ported from ktplots R package.
|
2025-03-25 |
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geosketch
|
public |
Geometry-preserving random sampling
|
2025-03-25 |
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cellphonedb
|
public |
No Summary
|
2025-03-25 |
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r-mr.cue
|
public |
MR.CUE is a package for Mendelian randomization informs shared genetic etiology underlying exposure and outcome by interrogating correlated horizontal pleiotropy.
|
2025-03-25 |
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r-mr.corr2
|
public |
MR.Corr2 is a package for two-sample Mendelian randomization using correlated instrumental variants accounting correlated horizontal pleiotropy.
|
2025-03-25 |
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r-maxprobes
|
public |
Maxprobes package collects cross-reactive probes of Illumina methylation array 450K and EPIC/850K.
|
2025-03-25 |
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r-mblm
|
public |
Provides linear models based on Theil-Sen single median and Siegel repeated medians. They are very robust (29 or 50 percent breakdown point, respectively), and if no outliers are present, the estimators are very similar to OLS.
|
2025-03-25 |
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r-presto
|
public |
Fast Wilcoxon and auROC
|
2025-03-25 |
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teip
|
public |
Masking tape to help commands do one thing well
|
2025-03-25 |
|
meme
|
public |
Motif-based sequence analysis tools
|
2025-03-25 |
|
modisco-lite
|
public |
Transcription Factor MOtif Discovery from Importance SCOres - lite
|
2025-03-25 |
|
modisco
|
public |
TF MOtif Discovery from Importance SCOres
|
2025-03-25 |
|
kundajelab-shap
|
public |
Kundaje lab edits to Scott Lundberg's unified approach to explain the output of any machine learning model.
|
2025-03-25 |
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scala-cli
|
public |
Scala CLI is a command-line tool to interact with the Scala language. It lets you compile, run, test, and package your Scala code (and more!)
|
2025-03-25 |
|
scalafmt
|
public |
Code formatter for Scala
|
2025-03-25 |
|
dotnet-repl
|
public |
A polyglot REPL built on .NET Interactive
|
2025-03-25 |
|
crystalline
|
public |
Language Server Protocol implementation for Crystal
|
2025-03-25 |
|
shards
|
public |
Dependency manager for the Crystal language
|
2025-03-25 |
|
crystal
|
public |
Fast and statically typed, compiled language with Ruby-like syntax
|
2025-03-25 |
|
rlwrap
|
public |
Readline wrapper: adds readline support to tools that lack it
|
2025-03-25 |
|
lemminx
|
public |
XML Language Server
|
2025-03-25 |
|
clojure-lsp
|
public |
Native, fast starting Clojure interpreter for scripting
|
2025-03-25 |
|
rb-xml-simple
|
public |
A simple API for XML processing
|
2025-03-25 |
|
rb-websocket-client-simple
|
public |
Simple WebSocket Client for Ruby
|
2025-03-25 |
|
rb-websocket
|
public |
Universal Ruby library to handle WebSocket protocol
|
2025-03-25 |
|
rb-webrick
|
public |
HTTP server toolkit
|
2025-03-25 |
|
rb-tty-spinner
|
public |
A terminal spinner for tasks that have non-deterministic time frame
|
2025-03-25 |
|
rb-security
|
public |
Interact with the macOS Keychain
|
2025-03-25 |
|
rb-rubyzip
|
public |
rubyzip is a ruby module for reading and writing zip files
|
2025-03-25 |
|
rb-jwt
|
public |
A pure ruby implementation of the RFC 7519 OAuth JSON Web Token (JWT) standard
|
2025-03-25 |
|
rb-execjs
|
public |
ExecJS lets you run JavaScript code from Ruby
|
2025-03-25 |
|
rb-event_emitter
|
public |
Ruby port of EventEmitter from Node.js
|
2025-03-25 |
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rb-tty-cursor
|
public |
The purpose of this library is to move the terminal cursor around and manipulate text by using intuitive method calls.
|
2025-03-25 |
|
r-lcmix
|
public |
Layered and chained mixture models
|
2025-03-25 |
|
r-primo
|
public |
Package in R for Integrative Multi-Omics association analysis
|
2025-03-25 |
|
r-ctwas
|
public |
Identify causal genes in TWAS analysis
|
2025-03-25 |
|
r-acat
|
public |
Aggregated Cauchy Association Test
|
2025-03-25 |
|
dcd
|
public |
The D Completion Daemon is an auto-complete program for the D programming language
|
2025-03-25 |
|
perl-app-cope
|
public |
Terminal colorizer
|
2025-03-25 |
|
ack
|
public |
A grep-like program for searching source code
|
2025-03-25 |
