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r-scalespikeslab
|
public |
A scalable Gibbs sampling implementation for high dimensional Bayesian regression
with the continuous spike-and-slab prior. Niloy Biswas, Lester Mackey and Xiao-Li
Meng, "Scalable Spike-and-Slab" (2022) <arXiv:2204.01668>.
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2025-03-25 |
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r-truncatednormal
|
public |
A collection of functions to deal with the truncated univariate and multivariate normal
and Student distributions, described in Botev (2017) <doi:10.1111/rssb.12162> and
Botev and L'Ecuyer (2015) <doi:10.1109/WSC.2015.7408180>.
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2025-03-25 |
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r-qrng
|
public |
Functionality for generating (randomized) quasi-random numbers in high dimensions.
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2025-03-25 |
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r-nprior
|
public |
We develop a unified and flexible Bayesian shrinkage procedure called "Neuronized Priors".
|
2025-03-25 |
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r-immunelens
|
public |
Immune Lymphocyte Estimation from Nucleotide Sequencing (Immune LENS) is an R package to calculate T and B cell fractions from WGS or WES data from hg19 or hg38 aligned genomes. Includes functions from TcellExTRECT package for support of WES analysis.
|
2025-03-25 |
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r-restriktor
|
public |
Allow for easy-to-use testing or evaluating of linear equality and inequality restrictions
about parameters and effects in (generalized) linear statistical models.
|
2025-03-25 |
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chrombpnet-variant-scorer
|
public |
A framework to score and analyze variant effects genome-wide using ChromBPNet models
|
2025-03-25 |
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outrigger
|
public |
Outrigger detects *de novo* exons and quantifies their percent spliced-in
|
2025-03-25 |
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r-susie.ash
|
public |
Variant of Sum of Single Effects (SuSiE) model with support for adaptive shrinkage (ash) prior
|
2025-03-25 |
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r-mr.ash.alpha_mccreight
|
public |
An R package implementing Mr.ASH method
|
2025-03-25 |
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dotnet-interactive
|
public |
.NET Interactive combines the power of .NET with many other languages to create notebooks, REPLs, and embedded coding experiences.
|
2025-03-25 |
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lua-magick
|
public |
Lua bindings to ImageMagick for LuaJIT using FFI
|
2025-03-25 |
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moonscript
|
public |
A language that compiles to Lua
|
2025-03-25 |
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lua-alt-getopt
|
public |
Lua API for getopt similar to getopt_long(3)
|
2025-03-25 |
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busted
|
public |
Elegant Lua unit testing.
|
2025-03-25 |
|
lua-term
|
public |
Terminal operations for Lua
|
2025-03-25 |
|
lua-luasystem
|
public |
Platform independent system calls for Lua
|
2025-03-25 |
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lua-penlight
|
public |
A set of pure Lua libraries focusing on input data handling (such as reading configuration files), functional programming (such as map, reduce, placeholder expressions,etc), and OS path management.
|
2025-03-25 |
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lua-dkjson
|
public |
David Kolf's JSON module for Lua
|
2025-03-25 |
|
lua-mediator_lua
|
public |
Mediator pattern implementation for pub-sub management
|
2025-03-25 |
|
lua-luassert
|
public |
Assertion library for Lua
|
2025-03-25 |
|
lua-say
|
public |
Lua string hashing library, useful for internationalization
|
2025-03-25 |
|
lua-cliargs
|
public |
Terminal operations for Lua
|
2025-03-25 |
|
chrombpnet_old
|
public |
Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
|
2025-03-25 |
|
modisco_old
|
public |
TF MOtif Discovery from Importance SCOres
|
2025-03-25 |
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r-qgg
|
public |
'Provides an infrastructure for efficient processing of large-scale genetic and phenotypic data including core functions for: 1) fitting linear mixed models, 2) constructing marker-based genomic relationship matrices, 3) estimating genetic parameters (heritability and correlation), 4) performing genomic prediction and genetic risk profiling, and 5) single or multi-marker association analyses. Rohde et al. (2019) <doi:10.1101/503631>.'
|
2025-03-25 |
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bamsync
|
public |
This utility adds the following information that is lost when realigning BAM files
|
2025-03-25 |
|
perl-app-rainbarf
|
public |
CPU/RAM/battery stats chart bar for tmux (and GNU screen)
|
2025-03-25 |
|
bioconductor-scdblfinder
|
public |
scDblFinder
|
2025-03-25 |
|
cowsay
|
public |
apjanke's fork of the classic cowsay project
|
2025-03-25 |
|
complexity
|
public |
Measure complexity of C source
|
2025-03-25 |
|
shell-color-scripts
|
public |
Collection of terminal colorscripts
|
2025-03-25 |
|
combine
|
public |
Tool for working with record-oriented data files
|
2025-03-25 |
|
lolcat
|
public |
Rainbows and unicorns!
|
2025-03-25 |
|
rb-manpages
|
public |
With this gem the rubygems command will detect man pages within gems and exposes them to the man command.
|
2025-03-25 |
|
rb-paint
|
public |
Terminal painter with RGB and 256 (fallback) color and terminal effects support.
|
2025-03-25 |
|
misfortune
|
public |
A fortune-mod clone
|
2025-03-25 |
|
fortune-mod
|
public |
Implementation of the Unix fortune command for displaying a random quotation, for Linux and other systems.
|
2025-03-25 |
|
recode
|
public |
Charset converter tool and library
|
2025-03-25 |
|
perl-locale-gettext
|
public |
Perl bindings for POSIX i18n gettext functions
|
2025-03-25 |
|
perl-app-xml-docbook-builder
|
public |
Build DocBook/XML files.
|
2025-03-25 |
|
perl-file-shouldupdate
|
public |
should files be rebuilt?
|
2025-03-25 |
|
perl-test-trap
|
public |
Trap exit codes, exceptions, output, etc.
|
2025-03-25 |
|
rinutils
|
public |
C11 / gnu11 utilities C library
|
2025-03-25 |
|
ueberzugpp
|
public |
Command line utility which allows to display images in the terminal, written in C++
|
2025-03-25 |
|
chafa
|
public |
Versatile and fast Unicode/ASCII/ANSI graphics renderer
|
2025-03-25 |
|
bool
|
public |
Utility for finding files that match a boolean expression.
|
2025-03-25 |
|
pexec
|
public |
Execute commands in parallel on local or remote hosts
|
2025-03-25 |
|
sharutils
|
public |
Makes so-called shell archives out of many files
|
2025-03-25 |
|
spell
|
public |
A clone of the standard Unix program of the same name, implemented as a wrapper for Ispell
|
2025-03-25 |
