|
r-seuratdisk
|
public |
Support for multi-modal single cell through h5Seurat and AnnData for Seurat
|
2025-03-25 |
|
borzoi
|
public |
borzoi
|
2025-03-25 |
|
baskerville
|
public |
Machine learning methods for DNA sequence analysis.
|
2025-03-25 |
|
mmsplice
|
public |
Predict splicing variant effect from VCF
|
2025-03-25 |
|
pyrle
|
public |
Genomic Rle-objects for Python
|
2025-03-25 |
|
enformer-pytorch
|
public |
Enformer - Pytorch
|
2025-03-25 |
|
discrete-key-value-bottleneck-pytorch
|
public |
Discrete Key / Value Bottleneck - Pytorch
|
2025-03-25 |
|
vector-quantize-pytorch
|
public |
Vector Quantization - Pytorch
|
2025-03-25 |
|
puffin
|
public |
Deep learning-inspired explainable sequence model for transcription initiation
|
2025-03-25 |
|
selene-sdk
|
public |
Framework for developing sequence-level deep learning networks.
|
2025-03-25 |
|
pytabix
|
public |
Fast random access to sorted files compressed with bgzip and indexed by tabix.
|
2025-03-25 |
|
scqers
|
public |
Multiplex profiling of developmental enhancers with quantitative, single-cell expression reporters
|
2025-03-25 |
|
rb-erubi
|
public |
Erubi is a ERB template engine for ruby. It is a simplified fork of Erubis
|
2025-03-25 |
|
r-hyprcoloc
|
public |
Hypothesis Prioritisation in multi-trait Colocalization (HyPrColoc)
|
2025-03-25 |
|
fastx_toolkit
|
public |
The FASTX-Toolkit is a collection of command line tools for
Short-Reads FASTA/FASTQ files preprocessing.
Next-Generation sequencing machines usually produce FASTA or FASTQ files,
containing multiple short-reads sequences (possibly with quality
information).
The main processing of such FASTA/FASTQ files is mapping (aka aligning) the
sequences to reference genomes or other databases using specialized
programs. Example of such mapping programs are: Blat, SHRiMP, LastZ, MAQ
and many many others
However, it is sometimes more productive to preprocess the FASTA/FASTQ files
before mapping the sequences to the genome - manipulating the sequences to
produce better mapping results.
The FASTX-Toolkit tools perform some of these preprocessing tasks.'
|
2025-03-25 |
|
perl-gdtextutil
|
public |
Text utilities for use with GD
|
2025-03-25 |
|
perl-gd
|
public |
Perl interface to the gd2 graphics library
|
2025-03-25 |
|
perl-extutils-constant
|
public |
generate XS code to import C header constants
|
2025-03-25 |
|
libgtextutils
|
public |
Gordon Text utils Library
|
2025-03-25 |
|
polyfun
|
public |
PolyFun (POLYgenic FUNctionally-informed fine-mapping)
|
2025-03-25 |
|
r-mrinstruments
|
public |
Data objects for various sets of instruments
|
2025-03-25 |
|
r-topr
|
public |
A collection of functions for visualizing,exploring and annotating genetic association results.Association results from multiple traits can be viewed simultaneously along with gene annotation, over the entire genome (Manhattan plot) or in the more detailed regional view.
|
2025-03-25 |
|
r-enshuman
|
public |
Gene information from 'Ensembl' genome builds 'GRCh38.p14' and 'GRCh37.p13' to use with the 'topr' package.
|
2025-03-25 |
|
snpeff
|
public |
Genetic variant annotation and effect prediction toolbox
|
2025-03-25 |
|
leafcutter_scripts
|
public |
Alternative Splicing Quantification, Differential Splicing, Outlier Splicing Detection, and Splicing QTL Mapping - scripts
|
2025-03-25 |
