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r-syntenyplotter
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public |
Genome Synteny Visualization
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2025-03-25 |
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r-genoplotr
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public |
Plot Publication-Grade Gene and Genome Maps
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2025-03-25 |
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nuc_process_early
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public |
NucProcess is a Python program to perform single-cell Hi-C sequence processing of paired read data.
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2025-03-25 |
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nuc_dynamics_early
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public |
NucDynamics is a Python/Cython program for the calculation of genome structure from single-cell Hi-C chromosome contact data using a simulated annealing particle dynamics protocol.Watershed-SV extends Watershed to model the impact of rare SVs
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2025-03-25 |
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perl-color-rgb
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public |
Simple rgb.txt parsing class
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2025-03-25 |
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perl-color-mix
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public |
Generate themes from an RGB color wheel.
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2025-03-25 |
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psonic
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public |
pSONIC is a tool for identifying Orthologs between multiple species, even when polyploidy is involved.
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2025-03-25 |
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genomesyn
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public |
A tool for constructing and visualizing genome synteny
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2025-03-25 |
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mummer4
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public |
MUMmer is a system for rapidly aligning entire genomes
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2025-03-25 |
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mcscanx
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public |
MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
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2025-03-25 |
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cluster
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public |
The open source clustering software available here implement the most commonly used clustering methods for gene expression data analysis.
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2025-03-25 |
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clustalw
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public |
ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins.
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2025-03-25 |
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cnefinder
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public |
CNEFinder: Finding Conserved Non-coding Elements in Genomes
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2025-03-25 |
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lima-vm
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public |
Linux virtual machines
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2025-03-25 |
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macos-term-size
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public |
Get the terminal window size on macOS
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2025-03-25 |
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giggle
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public |
No Summary
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2025-03-25 |
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r-metarep
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public |
User-friendly package for reporting replicability-analysis methods, affixed to meta-analyses summary. The replicability-analysis output provides an assessment of the investigated intervention, where it offers quantification of effect replicability and assessment of the consistency of findings. - Replicability-analysis for fixed-effects and random-effect meta analysis: - r(u)-value; - lower bounds on the number of studies with replicated positive and\or negative effect; - Allows detecting inconsistency of signals; - forest plots with the summary of replicability analysis results; - Allows Replicability-analysis with or without the common-effect assumption.
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2025-03-25 |
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rstudio-server
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public |
RStudio is an integrated development environment (IDE) for R
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2025-03-25 |
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efficient-evolution
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public |
Efficient evolution from protein language models
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2025-03-25 |
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evolocity
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public |
Evolutionary velocity with protein language models
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2025-03-25 |
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retroseq
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public |
Deep learning tool for identifying retrotransposons
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2025-03-25 |
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perl-parallel-forkmanager
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public |
A simple parallel processing fork manager
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2025-03-25 |
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retronet
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public |
Deep learning tool for identifying retrotransposons
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2025-03-25 |
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seg
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public |
Tool for identifying and masking segments of low compositional complexity in amino acid sequences
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2025-03-25 |
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exonerate
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public |
Exonerate - A generic tool for pairwise sequence comparison / alignment
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2025-03-25 |
