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r-syntenyplotter

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Genome Synteny Visualization

Installation

To install this package, run one of the following:

Conda
$conda install dnachun::r-syntenyplotter

Usage Tracking

1.0.0
1 / 8 versions selected
Downloads (Last 6 months): 0

Description

Draw syntenic relationships between genome assemblies. There are 3 functions which take a tab delimited file containing alignment data for syntenic blocks between genomes to produce either a linear alignment plot, an evolution highway style plot, or a painted ideogram representing syntenic relationships. There is also a function to convert alignment data in the DESCHRAMBLER/inferCAR format to the required data structure.

About

Summary

Genome Synteny Visualization

Last Updated

Dec 23, 2024 at 06:12

License

MIT

Total Downloads

23

Supported Platforms

noarch